BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120500 Os01g0120500|AK070131
         (254 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0120500  Conserved hypothetical protein                      355   2e-98

>Os01g0120500 Conserved hypothetical protein
          Length = 254

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 186/240 (77%)

Query: 15  TFVPVLSPLRKPPPQHLXXXXXXXXXXXXXXXXXXXXXXXXDLXXXXXXXXXXXXXXXXX 74
           TFVPVLSPLRKPPPQHL                        DL                 
Sbjct: 15  TFVPVLSPLRKPPPQHLAIRGSPHRRRGRRLSLAASSAASPDLEKEPSQSPSPSPQEKSP 74

Query: 75  GDLSAVAESVKVLKEAAKTRKVPSPEXXXXXXXXXXXXXDTSTFFETLGGTQSPGRTWML 134
           GDLSAVAESVKVLKEAAKTRKVPSPE             DTSTFFETLGGTQSPGRTWML
Sbjct: 75  GDLSAVAESVKVLKEAAKTRKVPSPELLAALAKIKKAKLDTSTFFETLGGTQSPGRTWML 134

Query: 135 IFTAKGRLEKGQYFPVTAVQRFDAAGKRIENGVYLGPVGSLTFEGRLSWKKKILAFIFER 194
           IFTAKGRLEKGQYFPVTAVQRFDAAGKRIENGVYLGPVGSLTFEGRLSWKKKILAFIFER
Sbjct: 135 IFTAKGRLEKGQYFPVTAVQRFDAAGKRIENGVYLGPVGSLTFEGRLSWKKKILAFIFER 194

Query: 195 VRIKVGPFGPLEISLGGGNDGREPSTKDPFFVWFYVDEEIAVAQGRGGGVAYWCRCKRVP 254
           VRIKVGPFGPLEISLGGGNDGREPSTKDPFFVWFYVDEEIAVAQGRGGGVAYWCRCKRVP
Sbjct: 195 VRIKVGPFGPLEISLGGGNDGREPSTKDPFFVWFYVDEEIAVAQGRGGGVAYWCRCKRVP 254



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,385,309
Number of extensions: 290156
Number of successful extensions: 675
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 155
Effective length of database: 11,866,615
Effective search space: 1839325325
Effective search space used: 1839325325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)