Os01g0120500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0120500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.92 | 0.315 | 13.9 | 0.328 | 1.43 | -0.803 | 0.701 | 3.14 | 0.0144 | 9.95 | 25.84 | 686 | -- | -- |
| 46.6 | 0.318 | 14 | -0.0935 | 1.43 | -0.583 | 0.565 | -- | -0.0688 | 10.1 | 24.84 | 578 | -- | -- |
| 46.52 | 0.318 | 13.9 | 0.336 | 1.42 | -0.878 | -- | 3.21 | -0.0114 | 10.1 | 26.3 | 625 | -- | -- |
| 47.29 | 0.32 | 14 | -0.0859 | 1.44 | -0.578 | -- | -- | -0.0738 | 10.1 | 25.49 | 569 | -- | -- |
| 140.14 | 0.551 | 13.9 | 0.881 | -- | -1.82 | -- | 5.13 | 0.229 | -- | 24.66 | 731 | -- | -- |
| 51.86 | 0.338 | 14 | -0.223 | 1.62 | -- | 0.633 | -- | -0.111 | 9.59 | -- | -- | -- | -- |
| 53.36 | 0.342 | 14 | -0.199 | 1.62 | -- | -- | -- | -0.11 | 9.59 | -- | -- | -- | -- |
| 145.86 | 0.562 | 14 | 0.11 | -- | -1.48 | -- | -- | 0.0367 | -- | 24.4 | 717 | -- | -- |
| 47.51 | 0.321 | 14 | -- | 1.44 | -0.594 | -- | -- | -0.0627 | 10.1 | 25.37 | 569 | -- | -- |
| 207.79 | 0.674 | 14 | -0.212 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 54.4 | 0.345 | 14 | -- | 1.62 | -- | -- | -- | -0.088 | 9.6 | -- | -- | -- | -- |
| 146.16 | 0.563 | 14 | -- | -- | -1.46 | -- | -- | 0.0223 | -- | 24.4 | 716 | -- | -- |
| 208.97 | 0.675 | 14 | -- | -- | -- | -- | -- | -0.0831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 2 | 37.98 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 7 |
| 3 | 38.16 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 7 |
| 16 | 38.84 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 22 | 39.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 26 | 39.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 8 |
| 52 | 39.79 | temperature | 15.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 111 | 40.53 | temperature | 30.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 114 | 40.56 | temperature | 10.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 126 | 40.67 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 162 | 40.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 219 | 41.26 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 386 | 41.91 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 12 |
| 419 | 42.03 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 10 |
| 561 | 42.59 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 570 | 42.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 614 | 42.78 | wind | 5.0 | 30 | < th | dose independent | rect. | 16 | 7 |
| 658 | 42.88 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 18 |
| 662 | 42.89 | temperature | 25.0 | 90 | < th | dose independent | sin | 16 | NA |
| 763 | 43.12 | temperature | 25.0 | 90 | > th | dose independent | sin | 15 | NA |
| 774 | 43.17 | temperature | 25.0 | 270 | > th | dose independent | sin | 17 | NA |
| 800 | 43.24 | temperature | 20.0 | 10 | > th | dose independent | sin | 13 | NA |
| 810 | 43.27 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 7 |
| 812 | 43.27 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 7 |
| 832 | 43.33 | wind | 1.0 | 30 | > th | dose independent | rect. | 16 | 7 |
| 904 | 43.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 928 | 43.50 | humidity | 90.0 | 30 | < th | dose independent | rect. | 16 | 7 |