BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0111300 Os01g0111300|AK105004
         (47 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0111300  Conserved hypothetical protein                       99   7e-22
Os12g0271750  Conserved hypothetical protein                       62   8e-11

>Os01g0111300 Conserved hypothetical protein
          Length = 47

 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  PFCLTPNRVALNLDTSAPNSMALNVRWHADLVSHPPWHGIQRQLTWR 47
          PFCLTPNRVALNLDTSAPNSMALNVRWHADLVSHPPWHGIQRQLTWR
Sbjct: 1  PFCLTPNRVALNLDTSAPNSMALNVRWHADLVSHPPWHGIQRQLTWR 47



>Os12g0271750 Conserved hypothetical protein
          Length = 42

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 32/42 (76%)

Query: 1  PFCLTPNRVALNLDTSAPNSMALNVRWHADLVSHPPWHGIQR 42
          PFCL  NRV LNLDTSA NS+ALN RW AD  SHP WH IQR
Sbjct: 1  PFCLASNRVPLNLDTSALNSVALNTRWDADSDSHPRWHVIQR 42



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,803,603
Number of extensions: 44703
Number of successful extensions: 117
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 47
Length of database: 17,035,801
Length adjustment: 20
Effective length of query: 27
Effective length of database: 15,991,521
Effective search space: 431771067
Effective search space used: 431771067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)