BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0108400 Os01g0108400|Os01g0108400
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0108400  Basic helix-loop-helix dimerisation region bHL...   276   1e-74

>Os01g0108400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 234

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 143/190 (75%)

Query: 45  QDMKGLCVKLASLIPKEHCSMSKMQAASRTQLGSLDEAAAYIKKLKERVDELHHKRSMMS 104
           QDMKGLCVKLASLIPKEHCSMSKMQAASRTQLGSLDEAAAYIKKLKERVDELHHKRSMMS
Sbjct: 45  QDMKGLCVKLASLIPKEHCSMSKMQAASRTQLGSLDEAAAYIKKLKERVDELHHKRSMMS 104

Query: 105 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHVQEGSLISLD 164
           I                                               QHVQEGSLISLD
Sbjct: 105 ITSSRCRSGGGGGPAAAAGQSTSGGGGGEEEEEDMTRTTAAAAVVEVRQHVQEGSLISLD 164

Query: 165 VVLICSAARPVKFHDVITVLEEEGADIISANFSLAAHNFYYTIYSRAFSSRIGIEASRIS 224
           VVLICSAARPVKFHDVITVLEEEGADIISANFSLAAHNFYYTIYSRAFSSRIGIEASRIS
Sbjct: 165 VVLICSAARPVKFHDVITVLEEEGADIISANFSLAAHNFYYTIYSRAFSSRIGIEASRIS 224

Query: 225 ERLRALVIRS 234
           ERLRALVIRS
Sbjct: 225 ERLRALVIRS 234



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,414,627
Number of extensions: 125358
Number of successful extensions: 637
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)