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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0108400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.6 (0.0898) R2 : 0.311
β1 : -4.76 (0.458) R2dD : 0.446 R2D : 0.116
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.17 (0.303) R2dE : 0.108 R2E : 0.0307
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.47 (1.27) R2dD*E : 0.0493 R2D*E : -0.114
γ1 : -0.159 (0.209) R2dN8 : 0.00196 R2N8 : -0.023
σ : 1.44
deviance : 954.28
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.4
memory length : 2310
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 17.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
940.87 1.44 5.62 -4.85 0.17 -2.19 2.22 4.92 -0.182 4.24 24.3 2286 17.8 --
971.47 1.45 5.48 -3.5 0.225 -2.06 1.91 -- 0.182 3.63 24.3 2301 17.9 --
950.92 1.44 5.61 -4.89 0.326 -2.01 -- 4.98 -0.121 3.26 24.3 2310 16.5 --
976.72 1.46 5.46 -3.5 0.257 -2 -- -- 0.195 3.39 24.2 2304 17 --
954.28 1.44 5.6 -4.76 -- -2.17 -- 4.47 -0.159 -- 24.4 2310 17.1 --
1072.98 1.54 5.32 -2.75 0.381 -- 1.4 -- 0.79 3.57 -- -- -- --
1078.68 1.54 5.32 -2.77 0.403 -- -- -- 0.781 4.29 -- -- -- --
978.5 1.46 5.46 -3.53 -- -2.14 -- -- 0.189 -- 23.99 2043 16.7 --
1256.52 1.65 5.31 -- 0.348 -0.9 -- -- 0.824 3.52 25 2043 13.9 --
1087.41 1.54 5.32 -2.75 -- -- -- -- 0.792 -- -- -- -- --
1280.66 1.67 5.25 -- 0.35 -- -- -- 1.09 4.45 -- -- -- --
1245.86 1.64 5.38 -- -- -1.36 -- -- 0.864 -- 23.3 420 16.5 --
1287.24 1.67 5.25 -- -- -- -- -- 1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 927.46 radiation 30.0 14400 < th dose independent rect. 20 11
2 928.38 radiation 20.0 14400 > th dose dependent rect. 6 1
15 928.61 radiation 30.0 14400 < th dose independent rect. 2 5
16 929.04 radiation 1.0 14400 > th dose independent rect. 9 4
20 929.82 radiation 1.0 14400 < th dose independent rect. 9 4
21 930.94 radiation 30.0 14400 < th dose independent rect. 6 1
29 933.92 atmosphere 1015.0 43200 > th dose independent rect. 14 6
32 934.20 atmosphere 1015.0 43200 > th dose independent rect. 15 1
43 934.27 atmosphere 1015.0 43200 < th dose independent rect. 15 1
48 934.74 atmosphere 1015.0 43200 < th dose independent rect. 18 1
49 934.80 atmosphere 1015.0 43200 < th dose independent rect. 15 4
61 935.49 atmosphere 1015.0 43200 > th dose dependent rect. 19 2
69 936.84 atmosphere 1015.0 43200 > th dose dependent rect. 13 8
75 937.65 atmosphere 1015.0 43200 > th dose dependent rect. 14 1
80 938.09 atmosphere 1015.0 43200 > th dose dependent rect. 13 4
88 938.58 radiation 20.0 14400 > th dose independent rect. 17 14
109 939.86 radiation 20.0 14400 > th dose independent rect. 6 1
125 940.76 radiation 1.0 43200 > th dose independent rect. 13 1
126 940.76 radiation 1.0 43200 < th dose independent rect. 13 1
127 940.76 radiation 1.0 43200 < th dose dependent rect. 13 1
141 943.07 radiation 1.0 14400 < th dose dependent rect. 9 4
196 949.61 temperature 25.0 14400 < th dose independent rect. 12 1
208 950.38 temperature 25.0 14400 < th dose independent rect. 17 1
209 950.52 humidity 80.0 43200 < th dose independent rect. 12 6
210 950.57 atmosphere 1015.0 43200 > th dose dependent rect. 1 1
213 951.18 humidity 80.0 43200 < th dose independent rect. 12 2
224 951.86 temperature 25.0 14400 > th dose independent rect. 17 1
225 951.93 humidity 80.0 43200 > th dose independent rect. 12 2
226 952.00 precipitation 0.1 43200 > th dose independent rect. 9 1
227 952.00 precipitation 0.1 43200 > th dose dependent rect. 9 1
231 952.19 precipitation 0.1 43200 < th dose independent rect. 9 1
232 952.19 precipitation 0.1 43200 < th dose dependent rect. 9 1
241 952.60 radiation 30.0 14400 > th dose dependent rect. 16 16
243 952.66 temperature 25.0 14400 > th dose independent rect. 13 1
274 954.02 humidity 80.0 43200 > th dose independent rect. 12 6
317 955.22 radiation 20.0 43200 < th dose independent rect. 17 3
323 955.32 radiation 10.0 43200 < th dose independent rect. 6 9
326 955.35 radiation 10.0 43200 < th dose independent rect. 2 13
330 955.36 radiation 10.0 43200 < th dose independent rect. 22 17
349 955.43 radiation 1.0 43200 < th dose dependent rect. 18 11
358 955.61 radiation 20.0 43200 < th dose independent rect. 17 6
385 955.76 radiation 10.0 43200 < th dose independent sin 2 NA
413 955.90 radiation 20.0 43200 < th dose independent rect. 17 10
435 956.10 radiation 10.0 43200 < th dose independent rect. 7 14
453 956.15 radiation 10.0 43200 < th dose independent rect. 11 6
598 956.74 temperature 20.0 270 > th dose dependent rect. 16 22
622 956.84 temperature 25.0 14400 < th dose independent rect. 11 8
642 956.91 radiation 10.0 43200 < th dose independent no NA NA
685 956.94 humidity 70.0 43200 > th dose dependent rect. 13 1
711 957.18 radiation 10.0 43200 < th dose independent rect. 13 23
718 957.23 atmosphere 1015.0 43200 > th dose dependent sin 17 NA
741 957.39 precipitation 0.1 43200 < th dose independent rect. 9 4
742 957.39 precipitation 0.1 43200 < th dose dependent rect. 9 4
761 957.61 radiation 10.0 43200 < th dose dependent rect. 4 1
764 957.66 precipitation 0.1 43200 > th dose independent rect. 9 4
765 957.66 precipitation 0.1 43200 > th dose dependent rect. 9 4
772 957.77 radiation 10.0 43200 < th dose dependent rect. 2 3
792 957.84 humidity 80.0 43200 > th dose independent rect. 17 1
794 957.84 atmosphere 1010.0 14400 > th dose independent rect. 4 8
798 957.90 radiation 1.0 43200 < th dose dependent rect. 18 8
811 957.98 temperature 25.0 14400 > th dose independent rect. 11 8
816 958.02 radiation 1.0 43200 < th dose dependent rect. 18 2
868 958.37 temperature 15.0 43200 < th dose independent rect. 10 1
908 958.60 atmosphere 1015.0 43200 < th dose independent rect. 11 2
909 958.60 atmosphere 1015.0 43200 < th dose independent rect. 10 4
929 958.78 atmosphere 1010.0 14400 > th dose independent rect. 8 2
932 958.80 temperature 15.0 43200 > th dose independent rect. 10 1
937 958.83 atmosphere 1015.0 43200 > th dose independent rect. 10 4
943 958.87 radiation 10.0 43200 < th dose dependent rect. 21 8
968 958.99 wind 9.0 43200 > th dose dependent rect. 16 1
977 959.09 radiation 1.0 43200 < th dose dependent rect. 18 20
994 959.18 radiation 1.0 43200 < th dose dependent rect. 18 17