BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0106600 Os01g0106600|AK061314
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0106600  Similar to Chitin-binding lectin 1 precursor (...   337   4e-93

>Os01g0106600 Similar to Chitin-binding lectin 1 precursor (PL-I)
          Length = 292

 Score =  337 bits (865), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 181/269 (67%)

Query: 1   MNAMDEEEQEQPPQRYWFPYWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPAARA 60
           MNAMDEEEQEQPPQRYWFPYWT                               TIPAARA
Sbjct: 1   MNAMDEEEQEQPPQRYWFPYWTSPPPPPPPPPPPPSSSRYRPPSPPSSRHPHPTIPAARA 60

Query: 61  APPLGPTNRRLHQQPPPPASRDGRHEXXXXXXXXXXXXTDTVLXXXXXXXXXXXXXXXXX 120
           APPLGPTNRRLHQQPPPPASRDGRHE            TDTVL                 
Sbjct: 61  APPLGPTNRRLHQQPPPPASRDGRHEPPPKPKDVVVIPTDTVLHHKQPPPTHHHQHQQHK 120

Query: 121 XXXXXXXXGDLRKDLKAGLAGMLSAASHGQQGTSIITLAGDNKGASMKISSPAPGSKGAG 180
                   GDLRKDLKAGLAGMLSAASHGQQGTSIITLAGDNKGASMKISSPAPGSKGAG
Sbjct: 121 VKDQEEKKGDLRKDLKAGLAGMLSAASHGQQGTSIITLAGDNKGASMKISSPAPGSKGAG 180

Query: 181 DDKRSSADGKGGVKAMINSNVQSINNSLLLHSSCSGGDLGVHXXXXXXXXXXXXXXXXXX 240
           DDKRSSADGKGGVKAMINSNVQSINNSLLLHSSCSGGDLGVH                  
Sbjct: 181 DDKRSSADGKGGVKAMINSNVQSINNSLLLHSSCSGGDLGVHLKLKLSSNSKSKSKTKSK 240

Query: 241 XXQQHNVVADTSNKEKKPDSSQEKKEAGT 269
             QQHNVVADTSNKEKKPDSSQEKKEAGT
Sbjct: 241 EKQQHNVVADTSNKEKKPDSSQEKKEAGT 269



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,706,816
Number of extensions: 265008
Number of successful extensions: 1582
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1579
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)