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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0633700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GDP dissociation inhibitor protein OsGDI1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.71 (0.0373) R2 : 0.532
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.08 (0.168) R2dE : 0.396 R2E : 0.477
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.498 (0.0828) R2dN8 : 0.055 R2N8 : 0.136
σ : 0.69
deviance : 219.57
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.3
memory length : 1845
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.42 0.658 5.85 -1.56 0.384 -2.75 0.161 2.69 0.191 22.7 23.95 4567 -- --
200.89 0.66 5.77 -1.27 0.383 -3.47 0.262 -- 0.263 23.1 22.86 4595 -- --
196.49 0.653 5.86 -1.56 0.384 -2.75 -- 2.66 0.19 22.5 23.88 4561 -- --
200.94 0.66 5.77 -1.26 0.387 -3.45 -- -- 0.28 22.6 22.82 4571 -- --
202.72 0.663 5.84 -1.44 -- -2.79 -- 2.8 0.189 -- 24.3 3461 -- --
363.18 0.893 5.58 0.555 0.402 -- 0.337 -- 1.1 23.3 -- -- -- --
363.62 0.893 5.58 0.543 0.403 -- -- -- 1.1 23 -- -- -- --
210.01 0.675 5.75 -1.02 -- -3.36 -- -- 0.289 -- 23.56 3616 -- --
210.36 0.676 5.72 -- 0.397 -3.22 -- -- 0.512 22.4 24.1 1671 -- --
373.71 0.903 5.57 0.552 -- -- -- -- 1.1 -- -- -- -- --
371.37 0.901 5.59 -- 0.408 -- -- -- 1.04 23.1 -- -- -- --
219.57 0.69 5.71 -- -- -3.08 -- -- 0.498 -- 24.3 1845 -- --
381.74 0.912 5.58 -- -- -- -- -- 1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.63 radiation 1 43200 < th dose independent rect. 18 11
2 184.94 wind 9 43200 < th dose dependent rect. 14 1
4 185.29 wind 1 43200 > th dose dependent rect. 14 1
5 185.71 wind 1 43200 > th dose dependent rect. 13 3
6 185.83 wind 9 43200 < th dose dependent rect. 13 3
8 186.37 radiation 1 43200 > th dose dependent rect. 18 1
28 187.59 wind 5 43200 > th dose independent rect. 14 2
32 188.34 wind 5 43200 < th dose independent rect. 14 2
33 188.35 wind 7 43200 < th dose dependent rect. 12 10
41 188.66 wind 1 43200 > th dose dependent rect. 13 9
63 189.24 radiation 1 43200 > th dose independent rect. 18 11
76 189.35 temperature 30 270 < th dose dependent rect. 11 22
79 189.38 wind 5 43200 < th dose independent rect. 14 6
89 189.49 wind 5 43200 > th dose independent rect. 14 6
133 189.96 humidity 60 43200 < th dose dependent rect. 19 19
146 190.15 radiation 1 43200 < th dose independent rect. 18 3
156 190.22 radiation 1 43200 < th dose independent rect. 18 7
170 190.35 humidity 60 43200 < th dose dependent rect. 8 6
174 190.38 humidity 60 43200 < th dose dependent rect. 24 14
195 190.55 wind 9 43200 < th dose dependent sin 20 NA
220 190.82 wind 1 43200 > th dose dependent sin 20 NA
235 190.90 radiation 1 43200 < th dose dependent rect. 3 2
241 190.94 humidity 60 43200 < th dose dependent rect. 11 3
256 191.09 wind 3 43200 > th dose independent rect. 11 4
307 191.54 humidity 60 43200 < th dose dependent rect. 12 1
327 191.74 wind 5 43200 < th dose independent rect. 13 12
352 191.91 temperature 25 4320 < th dose dependent rect. 17 5
361 191.98 humidity 60 43200 < th dose dependent sin 5 NA
383 192.16 temperature 25 4320 < th dose dependent rect. 20 1
413 192.34 wind 3 43200 > th dose independent rect. 20 1
418 192.37 wind 3 43200 > th dose independent rect. 9 7
450 192.61 radiation 1 14400 < th dose dependent rect. 18 18
476 192.74 radiation 1 43200 < th dose dependent rect. 19 10
504 192.91 wind 5 43200 > th dose independent rect. 13 12
566 193.36 wind 3 43200 > th dose independent rect. 9 13
567 193.36 wind 1 43200 < th dose dependent rect. 11 1
573 193.39 wind 3 43200 < th dose independent rect. 9 6
577 193.40 humidity 60 43200 > th dose independent rect. 19 17
595 193.54 wind 5 43200 < th dose independent sin 19 NA
630 193.79 wind 1 43200 > th dose independent rect. 24 1
664 193.94 temperature 25 4320 < th dose dependent sin 17 NA
681 194.03 humidity 80 43200 > th dose independent rect. 20 4
687 194.06 wind 1 43200 < th dose dependent rect. 8 18
705 194.11 radiation 1 14400 < th dose dependent rect. 16 20
756 194.39 wind 3 43200 < th dose independent rect. 20 1
763 194.41 radiation 1 14400 > th dose independent rect. 18 1
780 194.43 humidity 60 43200 < th dose independent rect. 19 17
791 194.48 humidity 70 43200 < th dose independent rect. 16 22
820 194.58 wind 3 43200 < th dose dependent rect. 20 2
875 194.79 temperature 25 4320 < th dose dependent rect. 17 2
889 194.85 wind 5 43200 > th dose independent sin 19 NA
913 194.95 humidity 80 43200 < th dose independent rect. 20 4
925 195.01 humidity 60 43200 < th dose independent sin 8 NA
928 195.03 humidity 70 43200 < th dose independent rect. 19 23
940 195.10 humidity 70 43200 < th dose independent rect. 4 23
945 195.11 humidity 70 43200 < th dose independent rect. 7 23
949 195.12 humidity 70 43200 > th dose independent rect. 16 21
951 195.12 humidity 70 43200 < th dose independent rect. 12 23
962 195.14 humidity 60 43200 < th dose dependent rect. 8 21
963 195.15 humidity 70 43200 < th dose independent no NA NA
980 195.21 humidity 70 43200 < th dose independent rect. 24 23