BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0633700 Os12g0633700|J065138B07
(84 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08730.1 | chr1:2779963-2788325 FORWARD LENGTH=1539 69 3e-13
AT1G54560.1 | chr1:20371649-20379745 REVERSE LENGTH=1530 69 3e-13
AT1G17580.1 | chr1:6039453-6049309 FORWARD LENGTH=1521 69 6e-13
AT5G20490.1 | chr5:6927064-6936825 REVERSE LENGTH=1546 67 2e-12
AT1G04160.1 | chr1:1086495-1096146 FORWARD LENGTH=1501 64 1e-11
AT5G43900.3 | chr5:17657241-17667413 REVERSE LENGTH=1566 64 2e-11
AT3G58160.1 | chr3:21534797-21541877 FORWARD LENGTH=1243 62 7e-11
AT4G28710.1 | chr4:14172280-14181771 FORWARD LENGTH=1517 61 1e-10
AT2G31900.1 | chr2:13560760-13569623 REVERSE LENGTH=1557 58 1e-09
AT2G20290.1 | chr2:8743275-8751878 REVERSE LENGTH=1494 56 4e-09
AT2G33240.1 | chr2:14086942-14096914 REVERSE LENGTH=1771 56 5e-09
AT1G04600.1 | chr1:1262123-1272376 FORWARD LENGTH=1731 55 6e-09
AT4G33200.1 | chr4:16002768-16014792 REVERSE LENGTH=1523 53 3e-08
>AT1G08730.1 | chr1:2779963-2788325 FORWARD LENGTH=1539
Length = 1538
Score = 69.3 bits (168), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A AGGVDDMTKLSYLHEPGVLQNL RYELNEIY
Sbjct: 67 APAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIY 100
>AT1G54560.1 | chr1:20371649-20379745 REVERSE LENGTH=1530
Length = 1529
Score = 69.3 bits (168), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A AGGVDDMTKLSYLHEPGVLQNL RYELNEIY
Sbjct: 62 APAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIY 95
>AT1G17580.1 | chr1:6039453-6049309 FORWARD LENGTH=1521
Length = 1520
Score = 68.6 bits (166), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A +GGVDDMTKLSYLHEPGVL+NL TRYELNEIY
Sbjct: 56 APSGGVDDMTKLSYLHEPGVLRNLETRYELNEIY 89
>AT5G20490.1 | chr5:6927064-6936825 REVERSE LENGTH=1546
Length = 1545
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/34 (88%), Positives = 30/34 (88%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A GGVDDMTKLSYLHEPGVL NLA RYELNEIY
Sbjct: 73 APPGGVDDMTKLSYLHEPGVLNNLAMRYELNEIY 106
>AT1G04160.1 | chr1:1086495-1096146 FORWARD LENGTH=1501
Length = 1500
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY-----ICYSAWPFTVNMPLFQSYCMT 57
A A GV+DMT+L+YLHEPGVLQNL +RY++NEIY I + PF L+ S+ MT
Sbjct: 59 APASGVEDMTRLAYLHEPGVLQNLQSRYDINEIYTYTGSILIAVNPFRRLPHLYSSHMMT 118
>AT5G43900.3 | chr5:17657241-17667413 REVERSE LENGTH=1566
Length = 1565
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY-----ICYSAWPFTVNMPLFQSYCM 56
A A GVDDMT+L+YLHEPGVLQNL +RY++NEIY I + PF L+ S+ M
Sbjct: 119 APASGVDDMTRLAYLHEPGVLQNLHSRYDINEIYTYTGSILIAVNPFRRLPHLYSSHMM 177
>AT3G58160.1 | chr3:21534797-21541877 FORWARD LENGTH=1243
Length = 1242
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A + GV+DMT+LSYLHEP VL NLATRYELNEIY
Sbjct: 57 APSEGVEDMTRLSYLHEPAVLDNLATRYELNEIY 90
>AT4G28710.1 | chr4:14172280-14181771 FORWARD LENGTH=1517
Length = 1516
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A A GVDDMT+L+YLHEPGVLQN+ +R+++NEIY
Sbjct: 58 APASGVDDMTRLAYLHEPGVLQNMKSRFDINEIY 91
>AT2G31900.1 | chr2:13560760-13569623 REVERSE LENGTH=1557
Length = 1556
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 27/34 (79%)
Query: 3 AAAGGVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
A GVDDMTKL+YLHEPGVL NL R+ LNEIY
Sbjct: 59 APPAGVDDMTKLAYLHEPGVLHNLDCRFALNEIY 92
>AT2G20290.1 | chr2:8743275-8751878 REVERSE LENGTH=1494
Length = 1493
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 7 GVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
GVDDMT L+YLHEPGVLQNL +RY ++EIY
Sbjct: 73 GVDDMTTLAYLHEPGVLQNLKSRYYIDEIY 102
>AT2G33240.1 | chr2:14086942-14096914 REVERSE LENGTH=1771
Length = 1770
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 7 GVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
GVDDMTKL+YLHEPGVL NL RY NEIY
Sbjct: 79 GVDDMTKLAYLHEPGVLLNLKARYNANEIY 108
>AT1G04600.1 | chr1:1262123-1272376 FORWARD LENGTH=1731
Length = 1730
Score = 55.5 bits (132), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 7 GVDDMTKLSYLHEPGVLQNLATRYELNEIY 36
GVDDMTKL+YLHEPGVL NL RY NEIY
Sbjct: 62 GVDDMTKLAYLHEPGVLLNLKCRYNANEIY 91
>AT4G33200.1 | chr4:16002768-16014792 REVERSE LENGTH=1523
Length = 1522
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 7 GVDDMTKLSYLHEPGVLQNLATRYELNEIYICYSAWPFTVNMPLFQSYCMTYNFNILTDI 66
GVDDMTKL+YLHE GVL NL RY LN+IY + VN F+ YN +++
Sbjct: 68 GVDDMTKLTYLHEAGVLYNLQRRYALNDIYTYTGSILIAVNP--FKKLPHLYNGHMMEQY 125
Query: 67 YG 68
G
Sbjct: 126 MG 127
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,770,140
Number of extensions: 58739
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 13
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)