Os12g0633000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carbohydrate kinase, FGGY family protein.
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Os12g0633000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carbohydrate kinase, FGGY family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.83 | 0.384 | 8.94 | -1.02 | 0.378 | -1.03 | 0.819 | -1.11 | -0.546 | 3.83 | 28.2 | 30 | -- | -- |
| 68.54 | 0.389 | 8.96 | -1.2 | 0.353 | -0.975 | 0.371 | -- | -0.585 | 3.61 | 28.2 | 30 | -- | -- |
| 68.29 | 0.385 | 8.95 | -1.1 | 0.37 | -1 | -- | -0.616 | -0.571 | 3.46 | 28.18 | 33 | -- | -- |
| 68.73 | 0.386 | 8.96 | -1.21 | 0.37 | -0.995 | -- | -- | -0.593 | 3.4 | 28.37 | 26 | -- | -- |
| 73.34 | 0.401 | 8.94 | -1.03 | -- | -0.716 | -- | -0.546 | -0.506 | -- | 26.9 | 26 | -- | -- |
| 81.47 | 0.423 | 8.92 | -0.982 | 0.109 | -- | 0.687 | -- | -0.38 | 7.17 | -- | -- | -- | -- |
| 82.73 | 0.426 | 8.92 | -0.968 | 0.11 | -- | -- | -- | -0.381 | 7.16 | -- | -- | -- | -- |
| 73.86 | 0.402 | 8.95 | -1.12 | -- | -0.696 | -- | -- | -0.528 | -- | 26.9 | 26 | -- | -- |
| 103.44 | 0.476 | 8.91 | -- | 0.196 | -0.503 | -- | -- | -0.365 | 4.13 | 28.37 | 26 | -- | -- |
| 83.37 | 0.427 | 8.92 | -0.966 | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
| 107.43 | 0.485 | 8.89 | -- | 0.102 | -- | -- | -- | -0.274 | 7.77 | -- | -- | -- | -- |
| 104.98 | 0.479 | 8.91 | -- | -- | -0.377 | -- | -- | -0.342 | -- | 27.28 | 7 | -- | -- |
| 107.99 | 0.485 | 8.89 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 2 | 59.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 11 | 59.82 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 17 | 60.15 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 52 | 61.29 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 61 | 61.50 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 104 | 62.07 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 105 | 62.07 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 123 | 62.37 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 191 | 63.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 216 | 63.51 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 218 | 63.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 221 | 63.58 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 222 | 63.58 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 225 | 63.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 228 | 63.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 245 | 63.75 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 256 | 63.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 299 | 64.15 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 13 |
| 357 | 64.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 365 | 64.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 382 | 64.69 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 406 | 64.86 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 416 | 64.94 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 432 | 64.99 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 437 | 65.00 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 442 | 65.02 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 464 | 65.13 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 479 | 65.16 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 485 | 65.21 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 535 | 65.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 546 | 65.45 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 549 | 65.45 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 550 | 65.46 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 21 | NA |
| 578 | 65.55 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 587 | 65.61 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 597 | 65.66 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 602 | 65.67 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 615 | 65.69 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 21 | NA |
| 617 | 65.69 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 635 | 65.71 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 16 |
| 696 | 65.82 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 714 | 65.86 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 724 | 65.88 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 725 | 65.88 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 749 | 65.93 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 779 | 65.99 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 783 | 66.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 790 | 66.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 791 | 66.02 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 796 | 66.02 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 817 | 66.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 821 | 66.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 828 | 66.08 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 831 | 66.09 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 841 | 66.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 849 | 66.11 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 964 | 66.25 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 19 |