FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0630100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.0603) R2 : 0.774
β1 : -7.24 (0.252) R2dD : 0.592 R2D : -0.363
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.06 (0.265) R2dE : 0.415 R2E : -0.694
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.18 (0.142) R2dN8 : 1.15 R2N8 : 0.185
σ : 1.09
deviance : 547.12
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 4.239
memory length : 7091
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
539.92 1.09 6.89 -7.01 0.296 6.14 -0.687 0.922 -5.11 9.25 2.176 7018 -- --
540.74 1.08 6.91 -7.15 0.306 6.04 -0.685 -- -5.13 9.26 1.867 6989 -- --
541.55 1.08 6.89 -7.03 0.304 6.15 -- 0.944 -5.11 8.88 2.253 7013 -- --
542.29 1.08 6.93 -7.24 0.306 6.08 -- -- -5.17 8.87 4.386 7006 -- --
546.26 1.09 6.9 -7.02 -- 6.13 -- 1.04 -5.13 -- 3.095 7115 -- --
1169.22 1.6 6.57 -4.18 0.391 -- -0.119 -- -3.6 5.74 -- -- -- --
1169.23 1.6 6.57 -4.18 0.391 -- -- -- -3.6 5.55 -- -- -- --
547.12 1.09 6.94 -7.24 -- 6.06 -- -- -5.18 -- 4.239 7091 -- --
1322.91 1.69 6.39 -- 0.176 2.44 -- -- -2.97 13.2 27.9 1406 -- --
1177.16 1.6 6.58 -4.16 -- -- -- -- -3.59 -- -- -- -- --
1629.19 1.89 6.47 -- 0.326 -- -- -- -3.13 6.1 -- -- -- --
1324.07 1.69 6.42 -- -- 2.42 -- -- -2.9 -- 27.95 1416 -- --
1634.69 1.89 6.47 -- -- -- -- -- -3.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 524.13 wind 7 43200 < th dose dependent rect. 8 2
4 528.26 wind 1 43200 > th dose dependent rect. 8 2
9 531.37 wind 5 43200 < th dose independent rect. 6 1
10 531.65 humidity 80 43200 < th dose independent rect. 22 1
11 531.72 wind 9 43200 > th dose dependent rect. 20 10
13 533.26 wind 5 43200 > th dose independent rect. 6 1
17 537.04 wind 9 43200 > th dose independent rect. 20 10
24 537.84 wind 3 43200 < th dose independent rect. 3 1
25 538.07 wind 3 43200 > th dose dependent rect. 20 19
31 539.44 wind 3 43200 > th dose dependent sin 4 NA
38 541.70 wind 3 43200 > th dose independent rect. 3 1
40 542.31 wind 3 43200 > th dose dependent rect. 2 13
42 542.97 wind 3 43200 > th dose independent rect. 3 8
43 543.13 wind 9 43200 < th dose independent rect. 20 10
55 544.76 radiation 10 14400 < th dose dependent rect. 18 1
81 547.87 temperature 10 4320 > th dose dependent rect. 18 1
87 548.62 wind 3 43200 < th dose independent rect. 3 7
91 548.75 radiation 40 14400 < th dose dependent rect. 18 9
101 549.13 wind 1 43200 > th dose dependent rect. 3 9
107 549.32 wind 7 43200 < th dose dependent rect. 3 9
111 549.37 radiation 10 14400 < th dose dependent rect. 18 11
113 549.50 wind 9 43200 < th dose dependent rect. 3 11
115 549.55 wind 3 43200 > th dose independent rect. 7 4
120 549.80 radiation 30 14400 < th dose independent rect. 7 1
121 549.86 radiation 10 14400 > th dose dependent rect. 17 13
125 550.07 wind 3 43200 > th dose dependent rect. 6 1
202 553.91 wind 9 43200 < th dose dependent sin 5 NA
206 554.13 humidity 80 43200 > th dose independent rect. 22 1
223 554.89 wind 5 43200 < th dose independent rect. 19 21
242 555.60 wind 3 43200 < th dose independent rect. 7 3
256 556.30 temperature 30 4320 < th dose dependent rect. 18 1
258 556.43 wind 3 43200 > th dose dependent rect. 19 13
281 557.59 wind 5 43200 > th dose independent rect. 19 21
296 558.72 radiation 30 14400 > th dose independent rect. 7 1
318 558.98 wind 9 43200 < th dose dependent rect. 20 16
338 560.00 radiation 30 14400 < th dose independent rect. 24 8
346 560.28 wind 3 43200 > th dose dependent sin 11 NA
351 560.48 wind 5 43200 < th dose independent rect. 15 21
352 560.49 radiation 30 14400 < th dose independent rect. 19 13
357 560.58 wind 5 43200 > th dose independent rect. 15 21
428 562.83 wind 5 43200 < th dose independent sin 3 NA
431 562.85 wind 5 43200 < th dose independent rect. 1 15
433 562.88 atmosphere 1000 43200 < th dose dependent rect. 11 2
436 562.98 radiation 10 14400 > th dose dependent rect. 17 1
452 563.03 wind 9 43200 > th dose independent rect. 20 5
462 563.50 wind 5 43200 > th dose independent rect. 2 14
485 564.04 wind 9 43200 > th dose dependent rect. 20 4
497 564.67 wind 5 43200 > th dose independent sin 3 NA
505 564.85 wind 5 43200 < th dose independent rect. 9 1
553 566.84 humidity 70 14400 < th dose dependent rect. 18 13
555 566.88 atmosphere 1000 43200 < th dose dependent rect. 9 6
562 567.11 humidity 70 14400 < th dose dependent rect. 18 3
657 569.70 wind 5 43200 > th dose independent rect. 9 1
668 570.03 temperature 10 4320 > th dose dependent rect. 7 16
681 570.21 radiation 30 14400 > th dose dependent rect. 16 16
699 570.50 wind 9 43200 < th dose independent rect. 20 4
846 573.19 temperature 10 4320 > th dose dependent sin 19 NA