Os12g0629700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0629700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like protein precursor.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	8.42	(0.061)	R²	:	0.799
β₁	:	1.85	(0.224)	R²_dD	:	0.0321	R²_D	:	-0.143
β₂	:	1.36	(0.143)	R²_dC	:	0.0405	R²_C	:	-0.182
β₃	:	-1.04	(0.191)	R²_dE	:	0.0153	R²_E	:	-0.297
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-5.17	(0.136)	R²_dN8	:	0.958	R²_N8	:	0.722
σ	:	1.13
deviance	:	583.95
__

_____

C
peak time of C	:	0.0295
E
wheather	:	humidity
threshold	:	57.83
memory length	:	1521
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
583.42	1.13	8.42	1.87	1.36	-1.07	0.159	0.493	-5.18	0.0146	58	1536	--	--
583.84	1.13	8.42	1.86	1.37	-1.04	0.193	--	-5.17	0.0365	57.83	1520	--	--
583.53	1.13	8.42	1.86	1.36	-1.07	--	0.496	-5.18	0.0183	57.98	1535	--	--
583.95	1.13	8.42	1.85	1.36	-1.04	--	--	-5.17	0.0295	57.83	1521	--	--
698.69	1.23	8.38	1.89	--	-0.984	--	0.777	-5.14	--	57.32	1570	--	--
621.61	1.17	8.37	1.64	1.31	--	0.0223	--	-4.93	23.9	--	--	--	--
621.62	1.17	8.37	1.64	1.31	--	--	--	-4.93	23.9	--	--	--	--
699.78	1.23	8.39	1.86	--	-0.93	--	--	-5.13	--	57.51	1569	--	--
660.53	1.2	8.45	--	1.38	-1.42	--	--	-5.26	0.0908	62.78	5622	--	--
729.81	1.26	8.34	1.68	--	--	--	--	-4.91	--	--	--	--	--
692.69	1.23	8.41	--	1.33	--	--	--	-5.11	0.0187	--	--	--	--
751.01	1.28	8.44	--	--	-1.38	--	--	-5.33	--	55.96	47520	--	--
804.47	1.32	8.38	--	--	--	--	--	-5.1	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	556.43	wind	7e+00	14400	< th	dose independent	rect.	18	1
2	557.92	wind	5e+00	14400	> th	dose dependent	rect.	17	2
6	561.12	wind	5e+00	14400	> th	dose independent	rect.	17	2
20	565.80	wind	7e+00	14400	< th	dose independent	rect.	15	5
21	566.08	wind	7e+00	14400	> th	dose independent	rect.	15	5
29	567.03	radiation	1e+00	43200	< th	dose dependent	rect.	19	7
76	570.51	atmosphere	1e+03	14400	> th	dose independent	rect.	20	1
83	570.78	wind	9e+00	14400	< th	dose dependent	rect.	17	1
94	571.05	atmosphere	1e+03	14400	< th	dose independent	rect.	20	1
95	571.11	atmosphere	1e+03	14400	< th	dose independent	rect.	15	1
98	571.19	atmosphere	1e+03	14400	> th	dose independent	rect.	15	1
100	571.23	atmosphere	1e+03	14400	< th	dose independent	rect.	13	3
105	571.37	atmosphere	1e+03	14400	> th	dose independent	rect.	13	11
112	571.51	atmosphere	1e+03	14400	< th	dose independent	rect.	13	11
197	572.10	radiation	1e+00	43200	< th	dose dependent	rect.	1	1
243	572.35	atmosphere	1e+03	14400	> th	dose independent	sin	17	NA
249	572.39	atmosphere	1e+03	14400	< th	dose independent	rect.	22	1
253	572.40	atmosphere	1e+03	14400	> th	dose independent	rect.	22	1
294	572.57	atmosphere	1e+03	14400	< th	dose independent	sin	17	NA
494	573.83	radiation	1e+00	43200	< th	dose dependent	rect.	23	3
534	574.05	wind	7e+00	14400	> th	dose independent	rect.	15	15
588	574.34	precipitation	1e-01	43200	> th	dose independent	rect.	17	1
600	574.39	precipitation	1e-01	43200	< th	dose independent	rect.	17	1
601	574.39	precipitation	1e-01	43200	< th	dose dependent	rect.	17	1
686	574.76	precipitation	1e-01	43200	> th	dose dependent	rect.	17	1
724	574.91	atmosphere	1e+03	14400	> th	dose independent	no	NA	NA
752	575.03	atmosphere	1e+03	14400	> th	dose independent	rect.	22	23
768	575.07	atmosphere	1e+03	14400	> th	dose independent	rect.	17	23
774	575.08	atmosphere	1e+03	14400	> th	dose independent	rect.	19	23
775	575.09	atmosphere	1e+03	14400	< th	dose independent	no	NA	NA
801	575.16	atmosphere	1e+03	14400	< th	dose independent	rect.	19	23
804	575.17	temperature	3e+01	43200	> th	dose dependent	rect.	8	1
826	575.21	atmosphere	1e+03	14400	< th	dose independent	rect.	22	23
830	575.23	wind	7e+00	14400	< th	dose independent	sin	15	NA
849	575.30	atmosphere	1e+03	14400	< th	dose independent	rect.	17	23
888	575.44	wind	7e+00	14400	> th	dose independent	sin	15	NA
963	575.71	temperature	3e+01	43200	> th	dose independent	rect.	8	1