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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0629600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0315) R2 : 0.465
β1 : -0.928 (0.116) R2dD : 0.0823 R2D : 0.0789
β2 : 0.657 (0.0809) R2dC : 0.0802 R2C : 0.0913
β3 : -0.871 (0.0854) R2dE : 0.151 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.432 (0.0719) R2dN8 : 0.0682 R2N8 : 0.0885
σ : 0.576
deviance : 153.02
__
_____
C
peak time of C : 7.1
E
wheather : temperature
threshold : 22.2
memory length : 759
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152 0.579 5.18 -0.802 0.654 -0.872 0.621 0.425 -0.399 6.94 22.2 757 -- --
152.68 0.576 5.18 -0.896 0.671 -0.881 0.545 -- -0.402 6.83 22.2 760 -- --
152.85 0.576 5.18 -0.835 0.652 -0.873 -- 0.254 -0.401 7.07 22.2 760 -- --
153.02 0.576 5.2 -0.928 0.657 -0.871 -- -- -0.432 7.1 22.2 759 -- --
174.61 0.615 5.2 -0.798 -- -0.994 -- 0.232 -0.372 -- 22.11 730 -- --
186.4 0.64 5.26 -1.22 0.797 -- 0.284 -- -0.726 7.6 -- -- -- --
186.62 0.64 5.26 -1.21 0.796 -- -- -- -0.727 7.67 -- -- -- --
174.42 0.615 5.2 -0.838 -- -1.03 -- -- -0.394 -- 21.9 688 -- --
172.66 0.612 5.19 -- 0.668 -1.05 -- -- -0.347 6.97 21.8 855 -- --
220.73 0.694 5.28 -1.2 -- -- -- -- -0.715 -- -- -- -- --
225.21 0.702 5.23 -- 0.787 -- -- -- -0.592 7.77 -- -- -- --
191.47 0.644 5.17 -- -- -1.21 -- -- -0.254 -- 21.86 736 -- --
258.68 0.751 5.25 -- -- -- -- -- -0.582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.29 temperature 20.0 720 > th dose dependent rect. 23 8
10 154.40 temperature 25.0 720 < th dose dependent rect. 23 4
11 154.80 temperature 25.0 720 < th dose dependent rect. 1 1
16 155.05 precipitation 0.1 14400 > th dose dependent rect. 20 2
23 155.30 temperature 25.0 720 < th dose dependent rect. 22 7
32 155.81 temperature 25.0 720 < th dose dependent sin 10 NA
34 155.82 temperature 10.0 720 > th dose dependent rect. 21 10
52 156.54 temperature 25.0 720 < th dose dependent rect. 19 13
55 156.65 temperature 25.0 720 < th dose dependent rect. 17 17
83 157.26 temperature 20.0 720 > th dose independent rect. 21 10
94 157.38 temperature 20.0 720 > th dose independent rect. 19 12
97 157.42 wind 1.0 43200 > th dose independent rect. 4 3
102 157.57 temperature 30.0 270 < th dose dependent rect. 23 12
114 157.82 temperature 10.0 720 > th dose dependent rect. 19 14
116 157.85 temperature 20.0 720 < th dose independent rect. 23 6
146 158.25 temperature 20.0 720 > th dose dependent sin 9 NA
160 158.43 precipitation 0.1 14400 > th dose independent rect. 21 1
162 158.45 temperature 20.0 720 > th dose independent rect. 23 7
163 158.48 precipitation 0.1 14400 < th dose independent rect. 21 1
165 158.48 precipitation 0.1 14400 < th dose dependent rect. 21 1
169 158.53 wind 9.0 43200 < th dose independent rect. 18 1
190 158.83 temperature 20.0 720 > th dose independent rect. 4 1
200 158.94 temperature 20.0 720 > th dose independent rect. 1 5
203 158.97 precipitation 0.1 14400 > th dose independent rect. 17 1
212 159.08 atmosphere 995.0 14400 > th dose independent rect. 8 5
220 159.16 temperature 25.0 270 < th dose dependent rect. 24 20
233 159.34 temperature 30.0 270 < th dose dependent sin 6 NA
236 159.39 temperature 20.0 720 < th dose independent rect. 1 1
238 159.41 precipitation 0.1 14400 > th dose dependent rect. 17 1
274 159.77 wind 9.0 43200 > th dose independent rect. 18 1
293 159.91 temperature 20.0 720 > th dose independent rect. 12 19
303 160.01 temperature 20.0 4320 > th dose independent rect. 18 5
311 160.05 wind 5.0 14400 > th dose independent rect. 14 1
312 160.05 temperature 20.0 4320 < th dose independent rect. 21 1
313 160.08 temperature 10.0 270 > th dose dependent sin 7 NA
318 160.11 temperature 20.0 4320 > th dose independent rect. 21 1
322 160.13 precipitation 0.1 14400 < th dose independent rect. 17 1
324 160.13 precipitation 0.1 14400 < th dose dependent rect. 17 1
330 160.16 temperature 20.0 4320 < th dose independent rect. 18 5
345 160.28 temperature 25.0 720 < th dose dependent rect. 21 22
367 160.39 wind 7.0 4320 > th dose dependent rect. 20 8
370 160.41 wind 1.0 43200 < th dose dependent rect. 4 3
377 160.45 temperature 20.0 720 > th dose independent sin 11 NA
381 160.46 wind 9.0 4320 > th dose dependent rect. 19 2
385 160.47 wind 5.0 14400 < th dose independent rect. 14 1
390 160.50 temperature 20.0 720 < th dose independent sin 10 NA
402 160.55 temperature 25.0 1440 < th dose dependent rect. 17 1
440 160.79 temperature 25.0 720 < th dose dependent no NA NA
448 160.84 atmosphere 995.0 14400 > th dose independent rect. 10 3
459 160.93 temperature 20.0 720 < th dose independent rect. 3 2
474 161.00 temperature 25.0 720 < th dose dependent rect. 6 23
485 161.05 temperature 25.0 720 < th dose dependent rect. 9 23
499 161.12 wind 9.0 4320 > th dose independent rect. 19 2
523 161.22 wind 9.0 14400 < th dose independent rect. 5 8
524 161.22 wind 9.0 43200 > th dose dependent rect. 18 2
545 161.33 wind 3.0 14400 > th dose dependent rect. 14 1
553 161.37 wind 9.0 4320 < th dose independent rect. 20 2
560 161.40 wind 7.0 4320 > th dose independent rect. 20 7
562 161.41 wind 1.0 43200 < th dose independent rect. 4 3
568 161.47 wind 9.0 14400 > th dose independent rect. 5 8
578 161.50 atmosphere 995.0 14400 > th dose independent rect. 12 1
587 161.52 wind 1.0 43200 > th dose dependent rect. 1 1
594 161.55 radiation 1.0 14400 < th dose dependent rect. 23 1
614 161.64 wind 9.0 14400 > th dose dependent rect. 10 2
634 161.77 wind 9.0 14400 < th dose independent rect. 2 11
637 161.78 temperature 25.0 1440 < th dose dependent rect. 17 5
664 161.90 wind 9.0 14400 < th dose independent rect. 9 3
665 161.90 wind 7.0 4320 < th dose independent rect. 20 8
684 161.96 wind 9.0 14400 > th dose dependent rect. 5 8
734 162.19 wind 9.0 14400 < th dose independent rect. 23 14
756 162.31 wind 9.0 14400 > th dose dependent rect. 6 6
758 162.32 temperature 20.0 720 > th dose independent rect. 19 19
760 162.32 radiation 1.0 14400 < th dose dependent rect. 22 3
803 162.47 wind 9.0 14400 > th dose independent rect. 9 4
808 162.48 wind 7.0 14400 > th dose independent rect. 11 2
821 162.52 radiation 1.0 14400 < th dose dependent rect. 24 3
834 162.57 radiation 1.0 14400 < th dose dependent rect. 22 5
849 162.62 atmosphere 995.0 14400 > th dose independent rect. 8 9
880 162.71 atmosphere 995.0 14400 > th dose independent rect. 10 7
903 162.76 humidity 90.0 43200 > th dose independent rect. 13 1
913 162.80 atmosphere 995.0 14400 > th dose independent rect. 12 5
914 162.80 atmosphere 995.0 14400 > th dose independent rect. 8 12
942 162.86 atmosphere 995.0 14400 > th dose independent rect. 10 10
983 162.97 humidity 80.0 43200 > th dose dependent rect. 13 1
991 163.00 atmosphere 995.0 14400 > th dose independent rect. 15 2
997 163.01 wind 7.0 14400 > th dose independent rect. 6 1
998 163.01 temperature 25.0 1440 < th dose dependent rect. 16 10