BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0629600 Os12g0629600|Os12g0629600
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11650.1 | chr4:7025127-7026113 REVERSE LENGTH=245 128 2e-30
AT1G73620.1 | chr1:27681432-27682954 FORWARD LENGTH=265 104 2e-23
AT1G77700.1 | chr1:29204747-29206217 FORWARD LENGTH=357 100 4e-22
AT1G18250.2 | chr1:6277024-6278005 REVERSE LENGTH=245 96 1e-20
AT1G75030.1 | chr1:28174418-28175255 FORWARD LENGTH=247 93 8e-20
AT4G38660.1 | chr4:18066448-18067984 REVERSE LENGTH=346 92 2e-19
AT1G75050.1 | chr1:28180116-28181062 FORWARD LENGTH=247 91 4e-19
AT5G38280.1 | chr5:15293325-15295838 REVERSE LENGTH=666 88 4e-18
AT4G24180.1 | chr4:12550356-12551221 REVERSE LENGTH=261 87 6e-18
AT1G75040.1 | chr1:28177754-28178731 FORWARD LENGTH=240 84 4e-17
AT1G19320.1 | chr1:6679327-6680178 FORWARD LENGTH=248 83 1e-16
AT1G20030.2 | chr1:6945725-6947017 FORWARD LENGTH=317 81 4e-16
AT1G75800.1 | chr1:28458889-28460447 FORWARD LENGTH=331 80 1e-15
AT5G24620.1 | chr5:8430918-8432289 FORWARD LENGTH=421 79 1e-15
AT5G40020.1 | chr5:16022896-16024294 REVERSE LENGTH=257 79 1e-15
AT4G36010.1 | chr4:17039472-17040976 REVERSE LENGTH=302 79 2e-15
AT5G02140.1 | chr5:423384-424437 FORWARD LENGTH=295 79 2e-15
AT2G28790.1 | chr2:12354664-12355413 REVERSE LENGTH=250 74 4e-14
AT4G38670.1 | chr4:18069856-18071227 REVERSE LENGTH=282 72 1e-13
AT2G17860.1 | chr2:7762257-7763018 REVERSE LENGTH=254 70 6e-13
AT1G70250.1 | chr1:26452975-26456088 FORWARD LENGTH=800 65 3e-11
AT4G36000.1 | chr4:17037583-17038297 REVERSE LENGTH=209 52 3e-07
>AT4G11650.1 | chr4:7025127-7026113 REVERSE LENGTH=245
Length = 244
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 110/222 (49%), Gaps = 80/222 (36%)
Query: 34 RCSFTVWPAATPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCG 93
+CS+TVW AA+P GGGR+L G +W ++V AGT R+WGRT C+FD SGRG C TGDC
Sbjct: 30 QCSYTVWAAASP-GGGRRLDAGQSWRLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCS 88
Query: 94 GALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIG--GSQDFYDLSVI 151
G L CT GQPP TLAE+ + + DFYD+S++
Sbjct: 89 GGL--------------------------QCTGWGQPPNTLAEYALNQFNNLDFYDISLV 122
Query: 152 DGYNLPMSFS----------------------------CSSGVTV-------------TC 170
DG+N+PM FS C++ TV +C
Sbjct: 123 DGFNIPMEFSPTSSNCHRILCTADINGQCPNVLRAPGGCNNPCTVFQTNQYCCTNGQGSC 182
Query: 171 RDS--------RCPDAYLFPEDN-TKTHACGGNSNYQVVFCP 203
D+ RCPDAY +P+D+ T T C N+NY+VVFCP
Sbjct: 183 SDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223
>AT1G73620.1 | chr1:27681432-27682954 FORWARD LENGTH=265
Length = 264
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 74/134 (55%), Gaps = 33/134 (24%)
Query: 34 RCSFTVWPAATP-------VGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+C++TVWP P GGG +LSP +T+ +P SGR WGR GCSFD SGRG
Sbjct: 49 KCTYTVWPGIQPSSGQSLLAGGGFKLSPNRAYTLQLPP-LWSGRFWGRHGCSFDRSGRGR 107
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQDFY 146
CATGDCGG+ C AGG+ PP TLAE T+G DFY
Sbjct: 108 CATGDCGGSFLC-----------------NGAGGV--------PPATLAEITLGHDMDFY 142
Query: 147 DLSVIDGYNLPMSF 160
D+S++DGYNL MS
Sbjct: 143 DVSLVDGYNLAMSI 156
>AT1G77700.1 | chr1:29204747-29206217 FORWARD LENGTH=357
Length = 356
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 32/135 (23%)
Query: 35 CSFTVWPAATP----VGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATG 90
C T+WPA TP GGG +L PG + + P G S GR+WGRTGC FD +G G+C TG
Sbjct: 97 CDQTIWPAITPGENFNGGGFELKPGQSIVFHAPVGWS-GRIWGRTGCKFDSTGTGTCETG 155
Query: 91 DCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQDFYDLSV 150
CG L C+ SG+PP +LAEFT+ + DFYD+S+
Sbjct: 156 SCGSTL--------------------------KCSASGKPPASLAEFTL-AALDFYDVSL 188
Query: 151 IDGYNLPMSFSCSSG 165
+DG+NLPMS + +G
Sbjct: 189 VDGFNLPMSVTPMNG 203
>AT1G18250.2 | chr1:6277024-6278005 REVERSE LENGTH=245
Length = 244
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 77/168 (45%), Gaps = 40/168 (23%)
Query: 34 RCSFTVWPAATP-------VGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+C VWP P GGG +L ++ +P SGR WGR GC+FD SGRG
Sbjct: 29 KCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPP-LWSGRFWGRHGCTFDRSGRGH 87
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQDFY 146
CATGDCGG+LSC G+PP TLAE T+G DFY
Sbjct: 88 CATGDCGGSLSCN-------------------------GAGGEPPATLAEITLGPELDFY 122
Query: 147 DLSVIDGYNLPMSF-------SCSSGVTVTCRDSRCPDAYLFPEDNTK 187
D+S++DGYNL MS CS V+ + CP N K
Sbjct: 123 DVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGK 170
>AT1G75030.1 | chr1:28174418-28175255 FORWARD LENGTH=247
Length = 246
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 72/133 (54%), Gaps = 36/133 (27%)
Query: 35 CSFTVWP------AATPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCA 88
C++TVWP + T GG L+PG + + P G S GR W RTGC+FD SG G+C
Sbjct: 32 CAYTVWPGTLSGNSITLGDGGFPLTPGASVQLTAPTGWS-GRFWARTGCNFDASGHGTCV 90
Query: 89 TGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQ---DF 145
TGDCGG L C T GG+ PP TLAEFT+G S DF
Sbjct: 91 TGDCGGVLKC------------------TGGGV--------PPATLAEFTVGSSNAGMDF 124
Query: 146 YDLSVIDGYNLPM 158
YD+S++DGYN+ M
Sbjct: 125 YDVSLVDGYNVKM 137
>AT4G38660.1 | chr4:18066448-18067984 REVERSE LENGTH=346
Length = 345
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 83/173 (47%), Gaps = 40/173 (23%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
RC +TVWP G G +L G + ++ P G S GR W RTGC FD SG G+
Sbjct: 37 RCGYTVWPGILSNAGSPTLSTTGFELPKGTSRSLQAPTGWS-GRFWARTGCKFDSSGSGT 95
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIG-GSQDF 145
C TGDCG AV AG L PP+TLAEFT+G G DF
Sbjct: 96 CKTGDCGSN------------------AVECAG------LGAAPPVTLAEFTLGTGGDDF 131
Query: 146 YDLSVIDGYNLPM-------SFSCSSGVTVTCRDSRCPDAYLFPEDNTKTHAC 191
YD+S++DGYN+PM S C+S T + +CP F + + AC
Sbjct: 132 YDVSLVDGYNIPMIVEVAGGSGQCASTGCTTDLNIQCPAELRFGDGDACKSAC 184
>AT1G75050.1 | chr1:28180116-28181062 FORWARD LENGTH=247
Length = 246
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 71/132 (53%), Gaps = 35/132 (26%)
Query: 35 CSFTVWPAA------TPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCA 88
C +TVWP T GG L+PG + + PAG S GR W RTGC+FD SG G+C
Sbjct: 33 CPYTVWPGILSGNDNTLGDGGFPLTPGASVQLTAPAGWS-GRFWARTGCNFDASGHGNCG 91
Query: 89 TGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTI--GGSQDFY 146
TGDCGG L C GG+ PP+TLAEFT+ G +DFY
Sbjct: 92 TGDCGGVLKC------------------NGGGV--------PPVTLAEFTLVGDGGKDFY 125
Query: 147 DLSVIDGYNLPM 158
D+S++DGYN+ M
Sbjct: 126 DVSLVDGYNVEM 137
>AT5G38280.1 | chr5:15293325-15295838 REVERSE LENGTH=666
Length = 665
Score = 87.8 bits (216), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 82/178 (46%), Gaps = 45/178 (25%)
Query: 34 RCSFTVWP-------AATPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+C +TVWP A + G L G++ INVP + SGR+WGR+ CS +G S
Sbjct: 32 KCDYTVWPGFLTMTTAVSLPTNGFSLKKGESRVINVPP-SWSGRLWGRSFCSTSSTGNFS 90
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGS--QD 144
CATGDCG +G I+ +PP TL +FT+ + QD
Sbjct: 91 CATGDCG------------------------SGKIECSDSGARPPTTLIDFTLDATDGQD 126
Query: 145 FYDLSVIDGYNLPMSF---------SCSSGVTVTCRDSRCPDAYLFPEDNTKTH--AC 191
FYD+SV+DGYNLP+ +CS+ V + CP + K H AC
Sbjct: 127 FYDVSVVDGYNLPLVVVPQRLGSGRTCSNVGCVVNLNKTCPSELKVMGSSNKEHPIAC 184
>AT4G24180.1 | chr4:12550356-12551221 REVERSE LENGTH=261
Length = 260
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 77/157 (49%), Gaps = 40/157 (25%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDG-SGRG 85
RCSFTVWP G G +L PG + + PA + SGR W RTGC+F+ +G+G
Sbjct: 40 RCSFTVWPGILSNSGSGDIGTTGFELVPGGSRSFQAPA-SWSGRFWARTGCNFNSDTGQG 98
Query: 86 SCATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGG---- 141
+C TGDCG + ++ +PP TLAEFTIG
Sbjct: 99 TCLTGDCG------------------------SNQVECNGAGAKPPATLAEFTIGSGPAD 134
Query: 142 ---SQDFYDLSVIDGYNLPMSFSCSSGVTVTCRDSRC 175
QDFYD+S++DGYN+PM S G TC + C
Sbjct: 135 PARKQDFYDVSLVDGYNVPMLVEASGGSEGTCLTTGC 171
>AT1G75040.1 | chr1:28177754-28178731 FORWARD LENGTH=240
Length = 239
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 79/169 (46%), Gaps = 45/169 (26%)
Query: 34 RCSFTVWPAATPVG-------GGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
C TVW A T G GG +L+PG + + PAG S GR W RTGC+FD SG G
Sbjct: 31 NCPTTVW-AGTLAGQGPKLGDGGFELTPGASRQLTAPAGWS-GRFWARTGCNFDASGNGR 88
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTI--GGSQD 144
C TGDCGG C G PP+TLAEFT+ G +D
Sbjct: 89 CVTGDCGGL---------------------------RCNGGGVPPVTLAEFTLVGDGGKD 121
Query: 145 FYDLSVIDGYNLPM-------SFSCSSGVTVTCRDSRCPDAYLFPEDNT 186
FYD+S++DGYN+ + S C V+ ++ CPD + N
Sbjct: 122 FYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNN 170
>AT1G19320.1 | chr1:6679327-6680178 FORWARD LENGTH=248
Length = 247
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 66/140 (47%), Gaps = 38/140 (27%)
Query: 34 RCSFTVWPAATPVGG------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSC 87
C T+WP G G L+ G + T V G S GR W RT C+FD SG G C
Sbjct: 33 HCGSTIWPGILTANGAQLGDGGFALASGSSVTFTVSPGWS-GRFWARTYCNFDASGSGKC 91
Query: 88 ATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGS----- 142
TGDCG L C A AG G PP TLAEFTIG S
Sbjct: 92 GTGDCGSKLKC-----------------AGAG--------GAPPATLAEFTIGSSGKKNA 126
Query: 143 -QDFYDLSVIDGYNLPMSFS 161
QDFYD+S++DGYN+ M +
Sbjct: 127 VQDFYDVSLVDGYNVQMKIT 146
>AT1G20030.2 | chr1:6945725-6947017 FORWARD LENGTH=317
Length = 316
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 67/134 (50%), Gaps = 34/134 (25%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+C +TVWP G G L G+T TIN P+ + GR WGRT CS D G+ S
Sbjct: 27 KCDYTVWPGILSNAGVSPLPTTGFVLLKGETRTINAPS-SWGGRFWGRTLCSTDSDGKFS 85
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGS--QD 144
CATGDCG +G I+ PP TLAEFT+ GS D
Sbjct: 86 CATGDCG------------------------SGKIECSGAGAAPPATLAEFTLDGSGGLD 121
Query: 145 FYDLSVIDGYNLPM 158
FYD+S++DGYN+ M
Sbjct: 122 FYDVSLVDGYNVQM 135
>AT1G75800.1 | chr1:28458889-28460447 FORWARD LENGTH=331
Length = 330
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 72/152 (47%), Gaps = 36/152 (23%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+C +TVWP G G L G+ TI+ P + GR WGRT CS D G+ +
Sbjct: 30 KCEYTVWPGLLSNAGVPPLPTTGFVLQKGEERTISAPT-SWGGRFWGRTQCSTDTDGKFT 88
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSG-QPPLTLAEFTIGGSQ-- 143
C TGDCG G C+ SG PP TLAEFT+ GS
Sbjct: 89 CLTGDCG-------------------------SGTLECSGSGATPPATLAEFTLDGSNGL 123
Query: 144 DFYDLSVIDGYNLPMSFSCSSGVTVTCRDSRC 175
DFYD+S++DGYN+PM + G + C + C
Sbjct: 124 DFYDVSLVDGYNVPMLVAPQGGSGLNCSSTGC 155
>AT5G24620.1 | chr5:8430918-8432289 FORWARD LENGTH=421
Length = 420
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 36/135 (26%)
Query: 34 RCSFTVWPAATPVGGGRQLSPGDTWTINVPAGTS-------SGRVWGRTGCSFDGSGRGS 86
C FT+WP T G G Q P + ++V SGR+W RTGC+FD +G G
Sbjct: 32 NCPFTIWPG-TLAGSGTQPLPTTGFRLDVGQSVRIPTALGWSGRIWARTGCNFDANGAGK 90
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIG---GSQ 143
C TGDCGG L C AG PP +L E T+G +
Sbjct: 91 CMTGDCGGKLEC-------------------AGN------GAAPPTSLFEITLGHGSDDK 125
Query: 144 DFYDLSVIDGYNLPM 158
DFYD+S++DGYNLP+
Sbjct: 126 DFYDVSLVDGYNLPI 140
>AT5G40020.1 | chr5:16022896-16024294 REVERSE LENGTH=257
Length = 256
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 36/135 (26%)
Query: 34 RCSFTVWPAATP-------VGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
+CSF +WPA P GG L G I+ P G S GR+W RTGC F + + +
Sbjct: 35 KCSFPIWPAVAPNSGHPVLASGGFYLPCGGIKRIDAPLGWS-GRIWARTGCDFTSNSKQA 93
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQ--- 143
C TGDC G L C L+ G+PP TL + + +
Sbjct: 94 CETGDCDGHLECNGLI-------------------------GKPPATLIQIAVQADKSKP 128
Query: 144 DFYDLSVIDGYNLPM 158
+FYD+S++DGYNLP+
Sbjct: 129 NFYDVSLVDGYNLPV 143
>AT4G36010.1 | chr4:17039472-17040976 REVERSE LENGTH=302
Length = 301
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 37/138 (26%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGS-GRG 85
+CS+TVWP G G L+P +T I +PA S GR+WGRT C+ D + GR
Sbjct: 30 QCSYTVWPGLLSGAGTSPLPTTGFSLNPTETRVIPIPAAWS-GRIWGRTLCTQDATTGRF 88
Query: 86 SCATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQ-PPLTLAEFTIGGSQ- 143
+C TGDCG + C+ SG PP TLAEFT+ G+
Sbjct: 89 TCITGDCGSS-------------------------TVECSGSGAAPPATLAEFTLNGANG 123
Query: 144 -DFYDLSVIDGYNLPMSF 160
DFYD+S++DGYN+PM+
Sbjct: 124 LDFYDVSLVDGYNIPMTI 141
>AT5G02140.1 | chr5:423384-424437 FORWARD LENGTH=295
Length = 294
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 37/139 (26%)
Query: 34 RCSFTVWP-------AATPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGS 86
C ++WP TP GG + G+ I+VP SGR+WGR GC+F+ +G+GS
Sbjct: 28 NCQESIWPGILGGGGQITPRNGGFHMGSGEETIIDVP-DKWSGRIWGRQGCTFNQNGKGS 86
Query: 87 CATGDCG-GALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQ-- 143
C TGDC G+++C GG+ PP T+ E T+G S
Sbjct: 87 CQTGDCNDGSINCQ-----------------GTGGV--------PPATVVEMTLGSSSSP 121
Query: 144 -DFYDLSVIDGYNLPMSFS 161
FYD+S++DG+NLP+S
Sbjct: 122 LHFYDVSLVDGFNLPVSMK 140
>AT2G28790.1 | chr2:12354664-12355413 REVERSE LENGTH=250
Length = 249
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 41/154 (26%)
Query: 34 RCSFTVWPAATPVGGGRQLSPG----DTWT---INVPAGTSSGRVWGRTGCSFDGSGRGS 86
C FTVWPA P G L G T+T NVP SGR+W RT C+ +G+ S
Sbjct: 34 NCPFTVWPAIQPNAGHPVLEKGGFALPTFTHRSFNVPTTHWSGRIWARTWCA-HYNGKFS 92
Query: 87 CATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTI--GGSQD 144
C TGDCG L C L G PP +LA+F + GG D
Sbjct: 93 CLTGDCGNRLECN-------------------------GLGGAPPASLAQFDLHHGGHHD 127
Query: 145 F--YDLSVIDGYNLPMSFSCSSGV----TVTCRD 172
F Y +S++DGYN+PM+ + G V CR+
Sbjct: 128 FSSYGVSLVDGYNVPMTVTPHEGHGVCPVVGCRE 161
>AT4G38670.1 | chr4:18069856-18071227 REVERSE LENGTH=282
Length = 281
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 69/137 (50%), Gaps = 39/137 (28%)
Query: 34 RCSFTVWP--------AATPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFD-GSGR 84
RC T+WP A P G R LS G + T+ +P + SGR+W RT CS D SG
Sbjct: 30 RCRNTIWPGLLSGANSAPLPTTGFR-LSRGKSKTVAIPE-SWSGRLWARTLCSQDRSSGS 87
Query: 85 GSCATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSG-QPPLTLAEFTIGGS- 142
C TGDCG G C+ SG +PP TLAEFT+ G+
Sbjct: 88 FVCLTGDCGS-------------------------GKVECSGSGAKPPATLAEFTLNGTG 122
Query: 143 -QDFYDLSVIDGYNLPM 158
DFYD+S++DGYNLPM
Sbjct: 123 GLDFYDVSLVDGYNLPM 139
>AT2G17860.1 | chr2:7762257-7763018 REVERSE LENGTH=254
Length = 253
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 35/137 (25%)
Query: 34 RCSFTVWPAATPVGG-------GRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDG-SGRG 85
+C++TVWP G G L+ ++ I++PA S GR+WGRT C+ + +G
Sbjct: 30 QCNYTVWPGLLSGAGTAPLPTTGFSLNSFESRLISIPAAWS-GRIWGRTLCNQNEITGIF 88
Query: 86 SCATGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGGSQ-- 143
+C TGDCG + + + AG I PP TLAEFT+ G++
Sbjct: 89 TCVTGDCGSSQ----------------IECSGAGAI--------PPATLAEFTLNGAENL 124
Query: 144 DFYDLSVIDGYNLPMSF 160
DFYD+S++DGYN+PM+
Sbjct: 125 DFYDVSLVDGYNIPMTI 141
>AT1G70250.1 | chr1:26452975-26456088 FORWARD LENGTH=800
Length = 799
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 37/167 (22%)
Query: 34 RCSFTVWPAA-----TPVGGGRQLSPGDTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCA 88
+C +T+WPA + G L G+T TI P+ + GR WGRT CS + +G SCA
Sbjct: 152 KCQYTIWPATYGYRRSLETTGFVLEKGETRTIKAPS-SWIGRFWGRTLCSTNSTGGFSCA 210
Query: 89 TGDCGGALSCMLLLFQLWPRYDPVLAVATAGGIKSCTLSGQPPLTLAEFTIGG-SQDFYD 147
TGDC T+G IK C P T+ EF + D+Y
Sbjct: 211 TGDC------------------------TSGKIK-CLGIPIDPTTVVEFNLASYGVDYYV 245
Query: 148 LSVIDGYNLPM-----SFSCSSGVTVTCRDSRCPDAYLFPEDNTKTH 189
++V +GYNLP+ + +C S V + CP + +H
Sbjct: 246 VNVFNGYNLPLLVTPENKNCRSIECVIDMNETCPSELMVNSSGLGSH 292
>AT4G36000.1 | chr4:17037583-17038297 REVERSE LENGTH=209
Length = 208
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
Query: 128 GQPPLTLAEFTIG--GSQDFYDLSVIDGYNLPM 158
+PP TLAEFT+G GS DFYD+S++DGYNLPM
Sbjct: 8 AEPPATLAEFTLGISGSLDFYDVSLVDGYNLPM 40
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,509,967
Number of extensions: 200569
Number of successful extensions: 552
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 24
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)