Os12g0626300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0626300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.05 | 0.326 | 7.26 | -0.572 | 0.963 | 0.779 | 0.0966 | -1.46 | -0.583 | 8.05 | 24.71 | 14 | -- | -- |
| 49.04 | 0.329 | 7.24 | -0.388 | 0.956 | 0.642 | 0.0501 | -- | -0.531 | 8.14 | 24.6 | 11 | -- | -- |
| 48.06 | 0.323 | 7.26 | -0.566 | 0.967 | 0.772 | -- | -1.45 | -0.574 | 8.06 | 24.7 | 18 | -- | -- |
| 49 | 0.328 | 7.24 | -0.387 | 0.956 | 0.653 | -- | -- | -0.531 | 8.15 | 24.6 | 9 | -- | -- |
| 97.63 | 0.463 | 7.29 | -0.575 | -- | 0.707 | -- | -1.76 | -0.571 | -- | 24.6 | 7 | -- | -- |
| 55.36 | 0.349 | 7.23 | -0.286 | 0.944 | -- | -0.0745 | -- | -0.468 | 9.18 | -- | -- | -- | -- |
| 55.38 | 0.348 | 7.23 | -0.289 | 0.944 | -- | -- | -- | -0.468 | 9.17 | -- | -- | -- | -- |
| 98.42 | 0.464 | 7.27 | -0.404 | -- | 0.606 | -- | -- | -0.557 | -- | 21.3 | 6 | -- | -- |
| 52.79 | 0.34 | 7.23 | -- | 0.948 | 0.556 | -- | -- | -0.477 | 8.33 | 24.72 | 9 | -- | -- |
| 107.04 | 0.483 | 7.25 | -0.292 | -- | -- | -- | -- | -0.463 | -- | -- | -- | -- | -- |
| 57.58 | 0.355 | 7.22 | -- | 0.944 | -- | -- | -- | -0.436 | 9.19 | -- | -- | -- | -- |
| 102.54 | 0.473 | 7.26 | -- | -- | 0.523 | -- | -- | -0.499 | -- | 21.8 | 5 | -- | -- |
| 109.29 | 0.488 | 7.25 | -- | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 5 | 45.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 7 | 45.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 11 | 46.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 14 | 46.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 22 | 46.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 32 | 46.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 36 | 46.46 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 38 | 46.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 22 |
| 41 | 46.53 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 135 | 47.04 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 139 | 47.08 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 172 | 47.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 184 | 47.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 192 | 47.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 204 | 47.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 11 |
| 214 | 47.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 248 | 47.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 316 | 47.70 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 339 | 47.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 356 | 47.80 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 357 | 47.81 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 3 |
| 374 | 47.85 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 464 | 47.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 590 | 48.13 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 643 | 48.17 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 665 | 48.19 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 667 | 48.20 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 744 | 48.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 770 | 48.31 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 790 | 48.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 831 | 48.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 10 |
| 866 | 48.42 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 13 |
| 903 | 48.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 18 |