BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0626300 Os12g0626300|J033141P18
         (108 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06590.1  | chr1:2016504-2024505 REVERSE LENGTH=917             90   2e-19

>AT1G06590.1 | chr1:2016504-2024505 REVERSE LENGTH=917
          Length = 916

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 52/83 (62%)

Query: 17  QNSDNAVLGLPYALASQSFCKSFNXXXXXXXXXXXXXXXXXXXGSTHAKRALSLVCQSLP 76
           + S NAVLGLPYALAS SFC+SFN                   GS H KRAL L+  + P
Sbjct: 755 KKSGNAVLGLPYALASISFCQSFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFP 814

Query: 77  MILGHGGLELRARAHIVLAKCYL 99
           MILGHGGLELRARA+I  A CYL
Sbjct: 815 MILGHGGLELRARAYIFEANCYL 837



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,841,229
Number of extensions: 44992
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)