Os12g0615800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D111/G-patch domain containing protein.
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Os12g0615800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D111/G-patch domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.06 | 0.297 | 11.5 | 0.715 | 0.373 | 0.722 | -0.798 | 1.19 | 0.11 | 13 | 16.8 | 95 | -- | -- |
| 41.01 | 0.298 | 11.5 | 0.548 | 0.356 | 0.707 | -0.579 | -- | 0.0708 | 12.8 | 18.6 | 108 | -- | -- |
| 42.03 | 0.304 | 11.5 | 0.551 | 0.381 | 0.702 | -- | 0.215 | 0.0704 | 14 | 16.8 | 95 | -- | -- |
| 41.93 | 0.302 | 11.5 | 0.509 | 0.394 | 0.665 | -- | -- | 0.0605 | 13.5 | 18 | 94 | -- | -- |
| 47.67 | 0.323 | 11.5 | 0.444 | -- | 1.04 | -- | 0.0786 | -0.00335 | -- | 18.21 | 26 | -- | -- |
| 47.66 | 0.324 | 11.5 | 0.675 | 0.607 | -- | -0.323 | -- | 0.173 | 14 | -- | -- | -- | -- |
| 48.04 | 0.325 | 11.5 | 0.665 | 0.608 | -- | -- | -- | 0.172 | 14.1 | -- | -- | -- | -- |
| 47.61 | 0.321 | 11.5 | 0.424 | -- | 1.06 | -- | -- | -0.0106 | -- | 18.1 | 18 | -- | -- |
| 48.16 | 0.323 | 11.5 | -- | 0.33 | 0.906 | -- | -- | -0.0218 | 13 | 17.18 | 99 | -- | -- |
| 70.2 | 0.392 | 11.5 | 0.64 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 59.71 | 0.361 | 11.5 | -- | 0.596 | -- | -- | -- | 0.0976 | 14.1 | -- | -- | -- | -- |
| 52.08 | 0.336 | 11.6 | -- | -- | 1.19 | -- | -- | -0.0723 | -- | 17.6 | 19 | -- | -- |
| 81.01 | 0.42 | 11.5 | -- | -- | -- | -- | -- | 0.0862 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 64 | 38.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 69 | 38.74 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 146 | 39.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 164 | 39.50 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 205 | 39.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 214 | 39.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 231 | 39.83 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 20 |
| 234 | 39.84 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 251 | 39.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 277 | 39.97 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 293 | 40.02 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 306 | 40.07 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 308 | 40.08 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 14 |
| 338 | 40.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 436 | 40.38 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 9 |
| 445 | 40.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 490 | 40.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 515 | 40.55 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 530 | 40.59 | temperature | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 533 | 40.60 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 550 | 40.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 558 | 40.63 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 565 | 40.63 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 572 | 40.64 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 583 | 40.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 599 | 40.67 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 615 | 40.69 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 19 |
| 627 | 40.71 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 635 | 40.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 660 | 40.76 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 14 |
| 679 | 40.77 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 17 |
| 701 | 40.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 711 | 40.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 843 | 40.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 886 | 40.94 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 8 |