BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0615800 Os12g0615800|AK073946
         (844 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17070.1  | chr1:5837653-5840202 FORWARD LENGTH=850            598   e-171
AT2G42330.1  | chr2:17631831-17634089 REVERSE LENGTH=753          561   e-160

>AT1G17070.1 | chr1:5837653-5840202 FORWARD LENGTH=850
          Length = 849

 Score =  598 bits (1542), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 323/663 (48%), Positives = 432/663 (65%), Gaps = 34/663 (5%)

Query: 188 KMMAMMGYKDGMGLGKNEQGIVAPVETTLRPKNAGLGSVEGFKEPK-PFFTKENLXXXXX 246
           K++  MGYK G GLGKN+QGIVAP+E  LRPKN G+G    FKE K P   K        
Sbjct: 206 KLLEKMGYKGG-GLGKNQQGIVAPIEAQLRPKNMGMG-YNDFKEAKLPDLKKVEEKKIIG 263

Query: 247 XXXXKKEQQR--------WSKKAGAKKGPVLTKNELLAMRSEQEQDEQPTVVQKVIDMRG 298
               + EQ          W KK   +K   +T  ELL    E++Q+      Q +IDMRG
Sbjct: 264 VSVSENEQSHGDRGGKNLWKKKK-VRKAVYVTAEELL----EKKQEAGFGGGQTIIDMRG 318

Query: 299 PQARVLTDLKGLNVEQEMEANDVPMPELQYNVRLLVDEAKADIVRLDGQLRREQEKVASL 358
           PQ RV+T+L+ L+ E++ +  DVPMPELQ+N+RL+VD  + +I ++D  LR E+E   SL
Sbjct: 319 PQVRVVTNLENLDAEEKAKEADVPMPELQHNLRLIVDLVEHEIQKIDRDLRNERESALSL 378

Query: 359 VREKEKVAKQEALQKRQLQVMEKIAGVLEQVRVDDTAGILSLEGLLKTFQELKACYVEEF 418
            +EKE +  +E  QKR L+ ME IA  + ++ +++T+G L+L+ L   F++L+  Y +++
Sbjct: 379 QQEKEMLINEEEKQKRHLENMEYIADEISRIELENTSGNLTLDSLAIRFEDLQTSYPDDY 438

Query: 419 KMCSVAWIACRFAHPLLIRVFQGWQPLQNPLFGLEIMSSWKDLLQGDQAYDFSGDVESMA 478
           K+CS++ IAC  A PL IR+FQGW PL + + GL+ +SSW+ LL+ ++ ++    V S  
Sbjct: 439 KLCSLSTIACSLALPLFIRMFQGWDPLSDAVHGLKAISSWRKLLEVEEDHNIW--VVS-T 495

Query: 479 PYAQLVCEVILPAVRISGTNSWEARDPEPMLRFLESWERLLPPIVLQSILEHVIMPKLSA 538
           PY+QLV EV+LPAVRI+G N+WE RDPEPMLRFLE+WE LLP  VLQ+IL+ V++PKLS 
Sbjct: 496 PYSQLVSEVVLPAVRIAGINTWEPRDPEPMLRFLETWETLLPSSVLQTILDTVVLPKLST 555

Query: 539 AVDSWDPRREKVPIHVWVHPWLPMLGQRIDTLCHSIRYKLSSVLHVWQAHDASAYAVLSP 598
           AV+ WDPRRE V IHVWVHPWLP+LGQ+++ L   I+ KLS+VL  W   D+SAY +LSP
Sbjct: 556 AVEYWDPRRELVAIHVWVHPWLPILGQKLEFLYQIIQMKLSNVLDAWHPSDSSAYTILSP 615

Query: 599 WKDVFDAASWEDLIVRYIVPKLKMALQEFQINPANQKLDQFNWVMIWASAIPVHHMVHML 658
           WK VFD  SWE L+ RYIVPKL++ALQEFQ+NPANQ L++F+WVM WASA+P+H M  M+
Sbjct: 616 WKTVFDTTSWEQLMRRYIVPKLQLALQEFQVNPANQNLERFDWVMKWASAVPIHLMADMM 675

Query: 659 EVDFFSKWQQVLYHWLCSPNPDFNEIMNWYKGWKGLFPPELLANERIRMLLTAGLDMMNR 718
           E  FF KW  VLYHWL +  P F EI  WY GWK LFP EL ANERIR+ L  GLDM+  
Sbjct: 676 ERFFFPKWLDVLYHWLRA-KPRFEEIQGWYYGWKELFPQELTANERIRIQLKRGLDMLME 734

Query: 719 AAEGLEVVQPGARENVGYLRATEKRQFDAAQQASQYMTHHAVPGAAMADMSFKESIQAYA 778
           A EG+EV QP A+ N      T+     A  QA   M    V       +S KE ++ +A
Sbjct: 735 AVEGVEVSQPRAKAN----ERTQSVPAQAQAQAKAQMDSTEV-------LSLKEVLEVFA 783

Query: 779 MDQGLLFMPRVGKFYNGMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVSLTQLIEMN 838
            +Q LLF P+  + +NG+ +Y FG VS+ IDSV + L AQ   G   W  V+   L+ M+
Sbjct: 784 QEQELLFKPKPNRMHNGLQIYGFGNVSVIIDSVNQKLLAQKDGG---WFLVTPDDLLRMH 840

Query: 839 RKA 841
              
Sbjct: 841 NNT 843



>AT2G42330.1 | chr2:17631831-17634089 REVERSE LENGTH=753
          Length = 752

 Score =  561 bits (1446), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/662 (43%), Positives = 412/662 (62%), Gaps = 31/662 (4%)

Query: 188 KMMAMMGYKDGMGLGKNEQGIVAPVETTLRPKNAGLGSVEGFKEPKPFF--------TKE 239
           K++  MGYK G GLGKN+QGIVAP+E  LRPKN G+G  +  ++  P F         K+
Sbjct: 109 KLLEKMGYK-GRGLGKNQQGIVAPIEVQLRPKNMGMGYNDFKEKNAPLFPCLNKVEEKKK 167

Query: 240 NLXXXXXXXXXKKEQQRWSKKAGAKKGPVLTKNELLAMRSEQEQDEQPTVVQKVIDMRGP 299
           ++            +  W KK   +K   +T  E L     ++Q+E     Q +ID RGP
Sbjct: 168 SVVVTVSENHGDGRRDLWKKK-NVRKEVYITAEEFLG----KKQEEGFGCDQLIIDKRGP 222

Query: 300 QARVLTDLKGLNVEQEMEANDVPMPELQYNVRLLVDEAKADIVRLDGQLRREQEKVASLV 359
           Q RV+  L+ L  E++    +V  PELQ+N+R +V   +  I++ D  LR E+    SL 
Sbjct: 223 QDRVVNSLRNLYAEEKATDANVQQPELQHNLRFIVKSLEHGILKTDKDLRNEKGLALSLQ 282

Query: 360 REKEKVAKQEALQKRQLQVMEKIAGVLEQVRVDDTAGILSLEGLLKTFQELKACYVEEFK 419
           +EKEK       QK     +  +A  ++++ V+  +G L+L+ L   F++L++ Y +++K
Sbjct: 283 QEKEKFKMGVKKQKTLFDNLGYVAEEIDRIEVEIASGNLTLDSLANRFKDLRSSYPDDYK 342

Query: 420 MCSVAWIACRFAHPLLIRVFQGWQPLQNPLFGLEIMSSWKDLLQGDQAYDFSGDVESMAP 479
            C+++ IA   A PL IR+FQGW PL +   G+E +SSWK LL+ +     S       P
Sbjct: 343 CCNLSCIASSLALPLFIRMFQGWDPLSDAEHGIEAISSWKMLLEVEDNQSIS------TP 396

Query: 480 YAQLVCEVILPAVRISGTNSWEARDPEPMLRFLESWERLLPPIVLQSILEHVIMPKLSAA 539
           Y+QLV EVILPAVR+SG N+WE RDPEPMLR LE+WE++LP ++ ++IL  V++PKLS A
Sbjct: 397 YSQLVSEVILPAVRVSGINTWEPRDPEPMLRLLETWEKMLPSLIFETILTTVVLPKLSIA 456

Query: 540 VDSWDPRREKVPIHVWVHPWLPMLGQRIDTLCHSIRYKLSSVLHVWQAHDASAYAVLSPW 599
           ++SW+PR E VPIH WVHPWLP+LGQ++++    IR K  ++L  W   D S + +LSPW
Sbjct: 457 IESWEPRLETVPIHFWVHPWLPVLGQKLESAYQIIRMKFGNLLDAWHPSDVSVHTILSPW 516

Query: 600 KDVFDAASWEDLIVRYIVPKLKMALQEFQINPANQKLDQFNWVMIWASAIPVHHMVHMLE 659
           K VFDAASWE L+ RYIVPKL++ALQEFQINPA+Q LD+FN VM W S++P+H M  ++E
Sbjct: 517 KTVFDAASWEQLMRRYIVPKLQVALQEFQINPADQNLDEFNLVMGWVSSVPIHLMTDLME 576

Query: 660 VDFFSKWQQVLYHWLCSPNPDFNEIMNWYKGWKGLFPPELLANERIRMLLTAGLDMMNRA 719
             FF KW  VLYHWLCS  P F+EIM W+ GWKG FP EL AN RI +    GLDM   A
Sbjct: 577 RFFFPKWLDVLYHWLCS-EPKFDEIMKWFLGWKGTFPQELSANRRIEIQFKRGLDMAREA 635

Query: 720 AEGLEVVQPGARENVGYLRATEKRQFDAAQQASQYMTHHAVPGAAMADMSFKESIQAYAM 779
            E +E+ QPGAREN+ Y +A E+RQ +   +    +           ++SFKE+++ +A 
Sbjct: 636 VERMEMSQPGARENISYHKAQEQRQSEGRAKVQAQVDDP-------EELSFKEAVELFAQ 688

Query: 780 DQGLLFMPRVGKFYNGMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVSLTQLIEMNR 839
           ++ LL  P+  + +NG+ +Y FG VS+ +DS    L AQ +EG  RW  V L  L++M+ 
Sbjct: 689 EKELLLKPKPHRMHNGLQIYRFGNVSVLLDSANSKLLAQ-EEG--RWFPVDLDSLLKMHY 745

Query: 840 KA 841
            A
Sbjct: 746 SA 747



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,711,143
Number of extensions: 632719
Number of successful extensions: 1653
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1644
Number of HSP's successfully gapped: 3
Length of query: 844
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 737
Effective length of database: 8,173,057
Effective search space: 6023543009
Effective search space used: 6023543009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)