Os12g0615400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 37 kDa inner envelope membrane protein, chloroplast precursor (E37).
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Os12g0615400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 37 kDa inner envelope membrane protein, chloroplast precursor (E37).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.36 | 0.196 | 16 | -0.134 | 0.365 | -0.269 | -0.0847 | 0.196 | -0.194 | 23.7 | 71 | 1353 | -- | -- |
| 17.45 | 0.195 | 16 | -0.119 | 0.36 | -0.266 | -0.0735 | -- | -0.189 | 23.7 | 71 | 1352 | -- | -- |
| 17.39 | 0.194 | 16 | -0.134 | 0.363 | -0.268 | -- | 0.21 | -0.194 | 23.7 | 71.17 | 1348 | -- | -- |
| 17.48 | 0.195 | 16 | -0.105 | 0.364 | -0.256 | -- | -- | -0.185 | 23.7 | 71.04 | 1352 | -- | -- |
| 21.41 | 0.216 | 16 | -0.139 | -- | -0.475 | -- | 0.277 | -0.186 | -- | 72.07 | 988 | -- | -- |
| 19.91 | 0.209 | 16 | -0.0483 | 0.384 | -- | -0.032 | -- | -0.145 | 23.9 | -- | -- | -- | -- |
| 19.91 | 0.209 | 16 | -0.047 | 0.384 | -- | -- | -- | -0.145 | 23.9 | -- | -- | -- | -- |
| 21.51 | 0.216 | 16 | -0.104 | -- | -0.464 | -- | -- | -0.182 | -- | 73.28 | 990 | -- | -- |
| 17.68 | 0.196 | 16 | -- | 0.364 | -0.252 | -- | -- | -0.17 | 23.7 | 72.86 | 1353 | -- | -- |
| 29.21 | 0.253 | 16 | -0.0354 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 19.97 | 0.209 | 16 | -- | 0.384 | -- | -- | -- | -0.14 | 23.9 | -- | -- | -- | -- |
| 21.79 | 0.217 | 16 | -- | -- | -0.453 | -- | -- | -0.17 | -- | 73.35 | 990 | -- | -- |
| 29.25 | 0.252 | 16 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 2 | 15.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 3 | 15.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 54 | 16.29 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 61 | 16.32 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 149 | 16.70 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 157 | 16.74 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 167 | 16.76 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 170 | 16.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 175 | 16.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 8 |
| 182 | 16.78 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 183 | 16.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 184 | 16.78 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 186 | 16.78 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 187 | 16.78 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 189 | 16.79 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 194 | 16.79 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 218 | 16.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 222 | 16.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 230 | 16.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 237 | 16.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 260 | 16.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 266 | 16.98 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 276 | 16.99 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 303 | 17.01 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 339 | 17.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 373 | 17.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 374 | 17.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 406 | 17.09 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 408 | 17.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 409 | 17.10 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 410 | 17.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 414 | 17.10 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 427 | 17.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 432 | 17.11 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 450 | 17.12 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 490 | 17.14 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 512 | 17.15 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 532 | 17.16 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 533 | 17.16 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 535 | 17.16 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 536 | 17.16 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 21 | NA |
| 570 | 17.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 582 | 17.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 600 | 17.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 608 | 17.19 | radiation | 1.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 611 | 17.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 616 | 17.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 629 | 17.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 630 | 17.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 9 |
| 635 | 17.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 12 |
| 650 | 17.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 703 | 17.21 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 704 | 17.21 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 715 | 17.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 746 | 17.21 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 747 | 17.22 | radiation | 1.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 827 | 17.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 846 | 17.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 865 | 17.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 882 | 17.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 893 | 17.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 899 | 17.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 958 | 17.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 974 | 17.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 994 | 17.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 12 |