Os12g0605800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-methylcrotonyl CoA carboxylase biotin-containing subunit (Fragment).
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Os12g0605800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-methylcrotonyl CoA carboxylase biotin-containing subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.88 | 0.311 | 9.86 | 0.648 | 1.87 | -0.828 | -1.81 | 2.24 | -0.105 | 20.8 | 30 | 2660 | -- | -- |
| 44.38 | 0.31 | 9.88 | 0.265 | 2.01 | -0.658 | -1.61 | -- | 0.0113 | 20.6 | 28.66 | 2105 | -- | -- |
| 54.56 | 0.344 | 9.87 | 0.651 | 1.9 | -0.861 | -- | 2.13 | -0.125 | 20.8 | 30 | 2467 | -- | -- |
| 54.19 | 0.343 | 9.88 | 0.273 | 1.97 | -0.668 | -- | -- | 0.0261 | 20.6 | 28.6 | 2105 | -- | -- |
| 251.06 | 0.738 | 9.82 | 0.611 | -- | -0.756 | -- | 2.22 | -0.161 | -- | 30.5 | 2981 | -- | -- |
| 58.08 | 0.357 | 9.89 | 0.0418 | 1.83 | -- | -1.85 | -- | -0.0491 | 20.7 | -- | -- | -- | -- |
| 69.41 | 0.39 | 9.89 | 0.103 | 1.84 | -- | -- | -- | -0.0486 | 20.7 | -- | -- | -- | -- |
| 244.04 | 0.728 | 9.86 | 0.324 | -- | -0.553 | -- | -- | -0.128 | -- | 30.5 | 5790 | -- | -- |
| 56.33 | 0.35 | 9.88 | -- | 1.95 | -0.649 | -- | -- | 0.00942 | 20.6 | 28.7 | 2063 | -- | -- |
| 260.31 | 0.754 | 9.84 | 0.0983 | -- | -- | -- | -- | -0.0641 | -- | -- | -- | -- | -- |
| 69.69 | 0.391 | 9.9 | -- | 1.84 | -- | -- | -- | -0.0601 | 20.7 | -- | -- | -- | -- |
| 245.79 | 0.73 | 9.86 | -- | -- | -0.524 | -- | -- | -0.133 | -- | 30.4 | 5815 | -- | -- |
| 260.56 | 0.753 | 9.85 | -- | -- | -- | -- | -- | -0.075 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.49 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 2 | 44.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 3 | 44.67 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 5 | 44.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 44.76 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 7 | 44.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 8 | 44.81 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 11 | 44.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 18 | 44.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 20 | 44.99 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 23 | 45.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 36 | 45.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 52 | 45.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 78 | 45.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 95 | 45.15 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 102 | 45.17 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 107 | 45.20 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 110 | 45.21 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 119 | 45.23 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 125 | 45.25 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 130 | 45.27 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 131 | 45.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 156 | 45.29 | radiation | 40 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 178 | 45.29 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 196 | 45.30 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 199 | 45.30 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 226 | 45.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 231 | 45.34 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 232 | 45.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 272 | 45.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 276 | 45.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 289 | 45.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 297 | 45.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 321 | 45.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 382 | 45.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 446 | 45.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 455 | 45.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 495 | 45.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 514 | 45.53 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 526 | 45.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 542 | 45.54 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 546 | 45.54 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 575 | 45.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 8 | NA |
| 710 | 45.60 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 715 | 45.60 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 854 | 45.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 909 | 45.65 | temperature | 30 | 4320 | < th | dose dependent | sin | 9 | NA |
| 935 | 45.66 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 938 | 45.66 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 940 | 45.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 967 | 45.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 23 |