Os12g0605500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tesmin/TSO1-like, CXC domain containing protein.
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Os12g0605500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tesmin/TSO1-like, CXC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.58 | 0.577 | 5.03 | -0.855 | 1.02 | 2.11 | 0.766 | 2.5 | 0.466 | 2.25 | 21.4 | 1481 | -- | -- |
| 157.44 | 0.584 | 5.12 | -1.35 | 1.02 | 1.77 | 1.01 | -- | 0.266 | 2.08 | 22.2 | 1403 | -- | -- |
| 152.5 | 0.575 | 5.03 | -0.848 | 1 | 2.1 | -- | 2.57 | 0.47 | 2.39 | 21.4 | 1432 | -- | -- |
| 158.68 | 0.587 | 5.13 | -1.37 | 0.969 | 1.78 | -- | -- | 0.279 | 2.37 | 22.19 | 1398 | -- | -- |
| 204.16 | 0.665 | 5.03 | -0.92 | -- | 2.17 | -- | 2.45 | 0.406 | -- | 21.8 | 2399 | -- | -- |
| 272.18 | 0.773 | 4.99 | -0.706 | 1.06 | -- | 0.655 | -- | 0.872 | 2.31 | -- | -- | -- | -- |
| 273.7 | 0.775 | 4.99 | -0.725 | 1.07 | -- | -- | -- | 0.868 | 2.42 | -- | -- | -- | -- |
| 204.45 | 0.666 | 5.14 | -1.31 | -- | 1.85 | -- | -- | 0.239 | -- | 22.2 | 1152 | -- | -- |
| 201.29 | 0.661 | 5.07 | -- | 0.901 | 1.49 | -- | -- | 0.542 | 2.36 | 22.4 | 1237 | -- | -- |
| 340.81 | 0.863 | 4.98 | -0.68 | -- | -- | -- | -- | 0.894 | -- | -- | -- | -- | -- |
| 287.54 | 0.793 | 4.97 | -- | 1.05 | -- | -- | -- | 0.949 | 2.41 | -- | -- | -- | -- |
| 244.26 | 0.728 | 5.07 | -- | -- | 1.51 | -- | -- | 0.501 | -- | 22.31 | 1052 | -- | -- |
| 352.99 | 0.877 | 4.97 | -- | -- | -- | -- | -- | 0.97 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 2 | 153.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 153.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 7 | 153.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 27 | 153.74 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 35 | 153.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 132 | 156.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 143 | 156.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 145 | 156.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 149 | 156.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 167 | 156.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 227 | 157.00 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 241 | 157.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 262 | 157.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 277 | 157.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 298 | 157.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 583 | 160.10 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 644 | 160.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 860 | 162.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 939 | 163.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 993 | 164.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |