BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0605500 Os12g0605500|AK073942
(760 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22780.1 | chr3:8048927-8052058 FORWARD LENGTH=696 251 1e-66
AT4G14770.1 | chr4:8481522-8484825 REVERSE LENGTH=675 248 1e-65
AT3G22760.1 | chr3:8044622-8047381 FORWARD LENGTH=610 209 4e-54
AT3G04850.1 | chr3:1332269-1335851 REVERSE LENGTH=640 152 6e-37
AT4G29000.1 | chr4:14293957-14296602 FORWARD LENGTH=604 96 5e-20
AT5G25790.1 | chr5:8977233-8979181 REVERSE LENGTH=460 96 6e-20
AT2G20110.2 | chr2:8684496-8686870 FORWARD LENGTH=579 92 2e-18
AT3G16160.1 | chr3:5473366-5475090 REVERSE LENGTH=369 71 2e-12
>AT3G22780.1 | chr3:8048927-8052058 FORWARD LENGTH=696
Length = 695
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 240/473 (50%), Gaps = 55/473 (11%)
Query: 298 NEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSD 357
N+P +P + +V + + GMRRRCL E G + + S D
Sbjct: 248 NQPLAVLPTNESVFNLHRGGMRRRCLDFEMPGKRKKDIVDDQQ-------------SVCD 294
Query: 358 NNLKTLRTPPCALPGIGLHLNALATVPKDKMVP-------HNDIQSSLNQASNVPSAVGS 410
NN+ + C +PGIGLHLNA+A KD + +IQ S + GS
Sbjct: 295 NNVAGESSSSCVVPGIGLHLNAVAMSAKDSNISVIHGYSISGEIQKSFS---------GS 345
Query: 411 SPPTDDPHTINDDSSQTA--------VVAYVGESSQGSPKKKRHKFDN-GDGTXXXXXXX 461
+ P T+ + S Q E + GS KKK K + G+G
Sbjct: 346 TTPIQSQDTVQETSDQAENEPVEEVPKALVFPELNLGSLKKKMRKSEQAGEGESCKRCNC 405
Query: 462 XXXXXXXXXXECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIR- 520
ECF AGV+C EPCSC C N P + ETVL+TR+QIESRNPLAFAPKVIR
Sbjct: 406 KKSKCLKLYCECFAAGVYCIEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRN 465
Query: 521 TEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGR 580
+ E +DD++KTPAS+RHKRGCNCKKS+C+KKYCECYQGGVGCS++CRCEGC N FGR
Sbjct: 466 ADSIMEASDDASKTPASARHKRGCNCKKSNCMKKYCECYQGGVGCSMNCRCEGCTNVFGR 525
Query: 581 REGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATP-----SV 635
++G +LL I E+K E++ E+ + V + P+ +TP +
Sbjct: 526 KDG-SLLVIMESKL---EENQETYEKRIAKIQHNVEVSKEVEQNPSSDQPSTPLPPYRHL 581
Query: 636 VDYRPLVAXXXXXXXXXXXXXXXGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLK 695
V ++P ++ + +S P E+ E +L
Sbjct: 582 VVHQPFLSKNRLPPTQFFLGTGSSSFRKPNSDLAQSQNEKKPLETVTEDKTEIMPEILL- 640
Query: 696 GESSPQTSVKVVSPNKKRVSPPRIGTGLS-PICK---SGRKLILKSIPSFPSL 744
+SP ++K +SPN KRVSPP+ G+ S I + +GRKLIL+SIP+FPSL
Sbjct: 641 --NSPIANIKAISPNSKRVSPPQPGSSESGSILRRRGNGRKLILRSIPAFPSL 691
>AT4G14770.1 | chr4:8481522-8484825 REVERSE LENGTH=675
Length = 674
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 233/448 (52%), Gaps = 46/448 (10%)
Query: 316 RGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGL 375
RG+RRRCL E G ++N++A ++S C +P IGL
Sbjct: 250 RGIRRRCLDFEMPGNKQTSSENNTAACESSSR--------------------CVVPSIGL 289
Query: 376 HLNALATVPKD-KMVPHNDIQSSLNQASNVPSAVGSSPPTDD--PHTINDDSSQTAVVA- 431
HLNA+ KD K D S N + ++ + + D + I +D+ Q V
Sbjct: 290 HLNAILMSSKDCKTNVTQDYSCSANIQVGLQRSISTLQDSLDQTENEIREDADQDVPVEP 349
Query: 432 YVGESSQGSPKKKRHKFDNGDGTXXXXXXXXXXXXXXXXXECFHAGVFCSEPCSCQGCLN 491
+ E + SPKKKR K D+G+G ECF AGV+C EPCSC C N
Sbjct: 350 ALQELNLSSPKKKRVKLDSGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFN 409
Query: 492 MPSNMETVLSTREQIESRNPLAFAPKVIR-TEPGQELADDSNKTPASSRHKRGCNCKKSS 550
P + + VL+TR+QIESRNPLAFAPKVIR ++ QE DD++KTPAS+RHKRGCNCKKS+
Sbjct: 410 KPIHEDVVLATRKQIESRNPLAFAPKVIRNSDSVQETGDDASKTPASARHKRGCNCKKSN 469
Query: 551 CLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDN 610
CLKKYCECYQGGVGCS++CRCEGCKNAFGR++G + + +E + E + +
Sbjct: 470 CLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSS-IDMEAEQEEENETSEKSRTAKSQQ 528
Query: 611 DKQLVIYQDSINLTPAESVLATPSVVDYRP-LVAXXXXXXXXXXXXXXXGGYSSRLEGHL 669
+ ++++ +D + P TP+ + YRP LV G
Sbjct: 529 NTEVLMRKDMSSALP-----TTPTPI-YRPELVQLPFSSSKNRMPPPQSLLGGGSSSGIF 582
Query: 670 KSDILLSP--------FESYAEMMLGDGTSNVLKGE-SSPQTSVKVVSPNKKRVSPPRIG 720
S L P E E + DG + + SP ++K VSPN KRVSPP +
Sbjct: 583 NSQYLRKPDISLSQSRIEKSFETVAVDGAEQMPEILIHSPIPNIKSVSPNGKRVSPPHME 642
Query: 721 TGLSPIC----KSGRKLILKSIPSFPSL 744
+ S GRKLIL+SIPSFPSL
Sbjct: 643 SSSSGSILGRRNGGRKLILQSIPSFPSL 670
>AT3G22760.1 | chr3:8044622-8047381 FORWARD LENGTH=610
Length = 609
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 175/482 (36%), Positives = 231/482 (47%), Gaps = 78/482 (16%)
Query: 285 SQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHST 344
S V N + N +E D + + H RG+RRRCL E G
Sbjct: 180 SVAVTNTDVVNNESESVDALSILH-------RGVRRRCLDFEVKG--------------- 217
Query: 345 NSTTPRRKISSSDNNLKTL--RTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQAS 402
NN +TL + C +P IGLHLN +A KDK V N+ S N
Sbjct: 218 -------------NNQQTLGESSSSCVVPSIGLHLNTIAMSSKDKNVA-NEYSFSGNIKV 263
Query: 403 NVPSAVGSSPPTDDPHTI------NDDSSQTAVVAYVGESSQG----SPKKKRHKFD-NG 451
V S++ +P H I DS Q V +S SPKKKR K + +G
Sbjct: 264 GVQSSL--TPVLHSQHDIVRENESGKDSGQIIEVVPKSLASVDLTPISPKKKRRKSEQSG 321
Query: 452 DG-TXXXXXXXXXXXXXXXXXECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRN 510
+G + ECF AG +C EPCSC C N P + + VL+TR+QIESRN
Sbjct: 322 EGDSSCKRCNCKKSKCLKLYCECFAAGFYCIEPCSCINCFNKPIHKDVVLATRKQIESRN 381
Query: 511 PLAFAPKVIR-TEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSC 569
PLAFAPKVIR ++ E+ +D++KTPAS+RHKRGCNCKKS+CLKKYCECYQGGVGCS++C
Sbjct: 382 PLAFAPKVIRNSDSIIEVGEDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINC 441
Query: 570 RCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINL-TPAES 628
RCEGCKNAFGR++G EE E G + T + +L + P
Sbjct: 442 RCEGCKNAFGRKDGSLFEQDEE-----NETSGTPGTKKTQQNVELFKPAAPPSTPIPFRQ 496
Query: 629 VLATPSVVDYRPLVAXXXXXXXXXXXXXXXGGYSSRLEGHLKSDILL---SPFESYAEMM 685
LA + L+ G Y+ R K D+ L S E+ E
Sbjct: 497 PLAQLPISSNNRLLPPQSHFHHGAIGSSSSGIYNIR-----KPDMSLLSHSRIETITE-D 550
Query: 686 LGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICK---SGRKLILKSIPSFP 742
+ D + N++ + + +SPN KRVS + + S + GR LI +S P+FP
Sbjct: 551 IDDMSENLI------HSPITTLSPNSKRVSLSHLDSPESTPWRRNGGGRNLI-RSFPTFP 603
Query: 743 SL 744
SL
Sbjct: 604 SL 605
>AT3G04850.1 | chr3:1332269-1335851 REVERSE LENGTH=640
Length = 639
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 472 ECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRT-EPGQELADD 530
ECF AG+FC EPCSCQ C N P + + V+ +RE I++RNPLAFAPKV+ T + +L +
Sbjct: 468 ECFSAGLFCGEPCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTSDTVIDLWVE 527
Query: 531 SNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFG 579
++KTPAS+RHKRGCNC+KS C KKYCEC+ GVGCS +CRC GCKN FG
Sbjct: 528 NSKTPASARHKRGCNCRKSGCSKKYCECFMMGVGCSSNCRCMGCKNTFG 576
>AT4G29000.1 | chr4:14293957-14296602 FORWARD LENGTH=604
Length = 603
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 472 ECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIES---RNPLAFAPKVIRT-EPGQEL 527
ECF +G +C + C+C C N N++ + RE +E+ RNP AF PK+ + G++
Sbjct: 147 ECFASGTYC-DGCNCVNCFN---NVDNEPARREAVEATLERNPFAFRPKIASSPHGGRDK 202
Query: 528 ADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALL 587
+D + +H +GC+CKKS CLKKYCEC+Q + CS +C+C CKN G E AL
Sbjct: 203 REDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEERQALF 262
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 509 RNPLAFAPKVIRTEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVS 568
R+P+ +PK P E D + + K+ CNCK S CLK YCEC+ G C
Sbjct: 105 RHPIPESPKARGPRPNVEGRD------GTPQKKKQCNCKHSRCLKLYCECFASGTYCD-G 157
Query: 569 CRCEGCKNAF----GRREGV 584
C C C N RRE V
Sbjct: 158 CNCVNCFNNVDNEPARREAV 177
>AT5G25790.1 | chr5:8977233-8979181 REVERSE LENGTH=460
Length = 459
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 472 ECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPG-QELADD 530
ECF +G +C+ C+C C N N + I RNP AF PK+ + G ++L ++
Sbjct: 110 ECFASGSYCN-GCNCVNCHNKLENESSRQVAISGILERNPDAFKPKIAGSPHGMKDLQEN 168
Query: 531 SNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALL 587
+ +H +GC+C+KS CLKKYCECYQ + CS +CRC+ CKN G E ALL
Sbjct: 169 VQQVLLIGKHSKGCHCRKSGCLKKYCECYQANILCSENCRCQDCKNFEGSEERKALL 225
>AT2G20110.2 | chr2:8684496-8686870 FORWARD LENGTH=579
Length = 578
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 8/112 (7%)
Query: 472 ECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIES---RNPLAFAPKVIRT-EPGQEL 527
ECF +G +C + C+C C N N+E + R+ +ES RNP AF PK+ + G++
Sbjct: 134 ECFASGTYC-DGCNCVNCFN---NVENEPARRQAVESTLERNPNAFRPKIAASPHGGRDN 189
Query: 528 ADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFG 579
++ +RH +GC+CKKS CLKKYCEC+Q + CS +C+C CKN G
Sbjct: 190 REEVGDVVMLARHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEG 241
>AT3G16160.1 | chr3:5473366-5475090 REVERSE LENGTH=369
Length = 368
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 472 ECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELADDS 531
+CF +GV C++ C C C N + + + RNP AF+ K + + L D+
Sbjct: 81 DCFASGVVCTD-CDCVDCHNNSEKCDAREAAMVNVLGRNPNAFSEKALGS-----LTDNQ 134
Query: 532 NKTPASSR---HKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNA 577
K ++ RGC CK++ CLKKYCEC+Q + CS +C+C CKN
Sbjct: 135 CKAAPDTKPGLLSRGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKNV 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,118,000
Number of extensions: 760579
Number of successful extensions: 1959
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1930
Number of HSP's successfully gapped: 14
Length of query: 760
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 654
Effective length of database: 8,200,473
Effective search space: 5363109342
Effective search space used: 5363109342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)