Os12g0601200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Uridine kinase family protein.
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Os12g0601200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Uridine kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.89 | 0.248 | 10.6 | -2.13 | 0.382 | 0.85 | -0.602 | -1.42 | -0.37 | 14.5 | 9.152 | 669 | -- | -- |
| 29.38 | 0.252 | 10.6 | -1.88 | 0.412 | 0.797 | -0.561 | -- | -0.298 | 14.8 | 6.228 | 734 | -- | -- |
| 29.04 | 0.251 | 10.6 | -2.15 | 0.3 | 0.858 | -- | -1.63 | -0.376 | 14.5 | 5.667 | 498 | -- | -- |
| 30.4 | 0.257 | 10.6 | -1.9 | 0.418 | 0.801 | -- | -- | -0.305 | 14.6 | 11.93 | 757 | -- | -- |
| 31.41 | 0.261 | 10.7 | -2.19 | -- | 1.01 | -- | -1.7 | -0.411 | -- | 16.02 | 268 | -- | -- |
| 37.73 | 0.288 | 10.6 | -1.68 | 0.447 | -- | -0.571 | -- | -0.177 | 16.2 | -- | -- | -- | -- |
| 38.64 | 0.291 | 10.6 | -1.69 | 0.445 | -- | -- | -- | -0.18 | 16.2 | -- | -- | -- | -- |
| 33.6 | 0.27 | 10.6 | -1.92 | -- | 1.03 | -- | -- | -0.33 | -- | 13.15 | 259 | -- | -- |
| 69.76 | 0.389 | 10.4 | -- | 0.427 | -1.1 | -- | -- | 0.424 | 16.4 | -16.02 | 47520 | -- | -- |
| 49.32 | 0.328 | 10.6 | -1.71 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 113.87 | 0.499 | 10.5 | -- | 0.477 | -- | -- | -- | 0.00771 | 16.2 | -- | -- | -- | -- |
| 79.17 | 0.414 | 10.5 | -- | -- | -1.1 | -- | -- | 0.327 | -- | -25.19 | 47520 | -- | -- |
| 126.21 | 0.524 | 10.5 | -- | -- | -- | -- | -- | -0.00285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 27.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 8 | 27.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 10 | 27.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 11 | 27.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 12 | 27.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 15 | 27.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 24 | 27.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 25 | 27.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 39 | 27.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 43 | 27.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 46 | 27.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 47 | 27.91 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 58 | 27.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 85 | 27.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 92 | 27.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 114 | 28.02 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 139 | 28.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 144 | 28.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 164 | 28.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 210 | 28.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 230 | 28.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 266 | 28.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 392 | 28.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 429 | 28.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 556 | 28.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 574 | 28.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 654 | 28.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 697 | 28.48 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 788 | 28.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 832 | 28.55 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 853 | 28.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 872 | 28.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 929 | 28.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 960 | 28.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |