BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0601200 Os12g0601200|AK059928
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03030.1 | chr1:701621-703568 FORWARD LENGTH=302 327 5e-90
AT3G27440.1 | chr3:10155555-10157931 FORWARD LENGTH=466 62 4e-10
AT4G26510.1 | chr4:13384503-13387920 FORWARD LENGTH=470 55 4e-08
AT1G55810.1 | chr1:20861273-20864003 FORWARD LENGTH=467 55 7e-08
AT5G40870.1 | chr5:16375021-16378384 FORWARD LENGTH=487 52 6e-07
>AT1G03030.1 | chr1:701621-703568 FORWARD LENGTH=302
Length = 301
Score = 327 bits (838), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 207/278 (74%), Gaps = 12/278 (4%)
Query: 36 ALCPTSFRIELPRRTIRAAILNKRHTVPCYQRQEGASSPAPQIEAKSMEEVYDALAEHLF 95
+L P F I + T R+ + C Q+++ ++ M+E+YD LAE L
Sbjct: 36 SLVPLHFSIRKRKNT-------PRYLISCSQKKD-----VTVVDGSCMDEIYDKLAERLV 83
Query: 96 SVLKNIEHLDSKYIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIATML 155
+ + K +VG+AGPPGAGKSTVA+EVV+RVNK W QK + + ++ ++A +L
Sbjct: 84 PTAAAMFSPNLKRLVGLAGPPGAGKSTVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVL 143
Query: 156 PMDGFHLYRSQLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGVGD 215
PMDGFHLYRSQLDAMEDPKEAHARRGAPWTFDP+ L CL+ L+ EGSVY PSFDHGVGD
Sbjct: 144 PMDGFHLYRSQLDAMEDPKEAHARRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGD 203
Query: 216 PVENDIFVKPQHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRHVAT 275
PVE+DIFV QHK+VIVEGNY+LLEE +W+DI +FDEKWFID+++D +MQRV RH++T
Sbjct: 204 PVEDDIFVSLQHKVVIVEGNYILLEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHIST 263
Query: 276 GKEPDVAAWRISYNDRPNAELIMKSKKSADLVIRSVDL 313
GK PDVA WR+ YNDRPNAELI+KSK +ADL+IRS+++
Sbjct: 264 GKPPDVAKWRVDYNDRPNAELIIKSKTNADLLIRSMNI 301
>AT3G27440.1 | chr3:10155555-10157931 FORWARD LENGTH=466
Length = 465
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 30/209 (14%)
Query: 104 LDSKYIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIATMLPMDGFH-- 161
L +++G+AG +GK+TV N SQ H+ L++ D F+
Sbjct: 26 LKQPFVIGVAGGTASGKTTVC-------NMIMSQLHDQRVVLVN---------QDSFYHS 69
Query: 162 LYRSQLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGVGDPVENDI 221
L + +L+ + + H P F+ L C++ LR V PS+D + +E+
Sbjct: 70 LTKEKLNKVHEYNFDH-----PDAFNTEVLLSCMEKLRSGQPVNIPSYDFKIHQSIESSS 124
Query: 222 FVKPQHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRH-VATGKEPD 280
V P ++I+EG L+L + RD L + K F+D D DV + R +QR V G+
Sbjct: 125 PVNPG-DVIILEG-ILVLNDPRVRD---LMNMKIFVDTDADVRLSRRIQRDTVERGRNIQ 179
Query: 281 VAAWRISYNDRPNA-ELIMKSKKSADLVI 308
+ + +P+ E I S K AD++I
Sbjct: 180 NVLEQYTKFVKPSFDEYIQPSMKYADIII 208
>AT4G26510.1 | chr4:13384503-13387920 FORWARD LENGTH=470
Length = 469
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 35/207 (16%)
Query: 108 YIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIATMLPMDGFH--LYRS 165
+++G+AG +GK+TV ++Q+++ ++ ++ +D F+ L
Sbjct: 50 FVIGVAGGAASGKTTVCDMIIQQLH----------------DQRVVLINLDSFYHNLTEE 93
Query: 166 QLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGVGDPVENDIF--V 223
+L + + H P FD L C++ LR+ +V P +D + +F V
Sbjct: 94 ELARVHEYNFDH-----PDAFDTEHLLSCMEKLRQGQAVDIPKYDF---KTYRSSVFRRV 145
Query: 224 KPQHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRH-VATGKEPDVA 282
P ++I+EG +LL D +R L + K F+ D DV + R ++R V G++
Sbjct: 146 NPT-DVIILEG--ILLFHDPR--VRKLMNMKIFVCTDADVRLARRIKRDTVENGRDIGTV 200
Query: 283 AWRISYNDRPNA-ELIMKSKKSADLVI 308
+ S +P + I+ +KK AD++I
Sbjct: 201 LDQYSKFVKPAFDDFILPTKKYADIII 227
>AT1G55810.1 | chr1:20861273-20864003 FORWARD LENGTH=467
Length = 466
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 39/210 (18%)
Query: 108 YIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIATMLPMDGFH--LYRS 165
+++G+AG +GK+TV ++Q+++ ++ A ++ D F+ +
Sbjct: 45 FVIGVAGGAASGKTTVCDMIMQQLH----------------DQRAVVVNQDSFYHNVNEV 88
Query: 166 QLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGVGDPVENDIF--- 222
+L + D H P FD + L ++ LR+ +V P++D +N++F
Sbjct: 89 ELVRVHDYNFDH-----PDAFDTEQLLSSMEKLRKGQAVDIPNYDF---KSYKNNVFPPR 140
Query: 223 -VKPQHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRHVATGKEPDV 281
V P ++I+EG +L+ D +R L + K F+D D DV + R ++R K D+
Sbjct: 141 RVNPS-DVIILEG--ILIFHDPR--VRDLMNMKIFVDADADVRLARRIKRDTVE-KGRDI 194
Query: 282 AAWRISYND--RPNAE-LIMKSKKSADLVI 308
A Y+ +P E I+ +KK AD++I
Sbjct: 195 ATVLDQYSKFVKPAFEDFILPTKKYADIII 224
>AT5G40870.1 | chr5:16375021-16378384 FORWARD LENGTH=487
Length = 486
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
Query: 108 YIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIATMLPMDGFH--LYRS 165
+I+G++G +GK+TV ++Q Q H++ L++ D F+ L
Sbjct: 63 FIIGVSGGTASGKTTVCDMIIQ-------QLHDHRVVLVN---------QDSFYRGLTSE 106
Query: 166 QLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGVGDPVENDIFVKP 225
+L +++ H P FD + L C +TL+ P +D +
Sbjct: 107 ELQRVQEYNFDH-----PDAFDTEQLLHCAETLKSGQPYQVPIYDFKTHQRRSDTFRQVN 161
Query: 226 QHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRH-VATGKEPDVAAW 284
++I+EG +L+ D+ +R L + K F+D D DV + R ++R V G++ +
Sbjct: 162 ASDVIILEG--ILVFHDSR--VRNLMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLE 217
Query: 285 RISYNDRPNA-ELIMKSKKSADLVI 308
+ + +P + ++ SKK AD++I
Sbjct: 218 QYAKFVKPAFDDFVLPSKKYADVII 242
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,982,019
Number of extensions: 293575
Number of successful extensions: 1113
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 5
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)