Os12g0597300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mutator-like transposase-like protein.
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Os12g0597300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mutator-like transposase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.98 | 0.188 | 10.1 | 0.786 | 0.377 | 0.37 | -0.399 | -0.246 | 0.0747 | 4.77 | 1011 | 5743 | -- | -- |
| 16.08 | 0.187 | 10.1 | 0.759 | 0.378 | 0.37 | -0.329 | -- | 0.0639 | 4.75 | 1012 | 6333 | -- | -- |
| 16.29 | 0.188 | 10.1 | 0.786 | 0.371 | 0.369 | -- | -0.141 | 0.0742 | 4.84 | 1012 | 6346 | -- | -- |
| 16.39 | 0.189 | 10.1 | 0.753 | 0.368 | 0.363 | -- | -- | 0.065 | 4.88 | 1012 | 6415 | -- | -- |
| 23.6 | 0.226 | 10.1 | 0.806 | -- | 0.346 | -- | -0.183 | 0.0808 | -- | 1012 | 6406 | -- | -- |
| 20.06 | 0.21 | 10.1 | 0.594 | 0.368 | -- | -0.347 | -- | -0.0171 | 4.75 | -- | -- | -- | -- |
| 20.37 | 0.211 | 10.1 | 0.596 | 0.366 | -- | -- | -- | -0.0152 | 4.85 | -- | -- | -- | -- |
| 23.7 | 0.227 | 10.1 | 0.765 | -- | 0.364 | -- | -- | 0.0721 | -- | 1012 | 6426 | -- | -- |
| 29.29 | 0.252 | 10.2 | -- | 0.379 | 0.102 | -- | -- | -0.061 | 4.79 | 1013 | 9990 | -- | -- |
| 27.46 | 0.245 | 10.1 | 0.609 | -- | -- | -- | -- | -0.00577 | -- | -- | -- | -- | -- |
| 29.73 | 0.255 | 10.2 | -- | 0.377 | -- | -- | -- | -0.0816 | 4.8 | -- | -- | -- | -- |
| 34.13 | 0.272 | 10.2 | -- | -- | -0.29 | -- | -- | -0.145 | -- | 1012 | 47520 | -- | -- |
| 37.26 | 0.285 | 10.2 | -- | -- | -- | -- | -- | -0.0734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.14 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 2 | 15.19 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 8 | 15.27 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 18 | 15.30 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 58 | 15.35 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 68 | 15.35 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 72 | 15.36 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 5 | NA |
| 80 | 15.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 142 | 15.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 183 | 15.42 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 5 | NA |
| 186 | 15.42 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 325 | 15.49 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 456 | 15.55 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 501 | 15.56 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 505 | 15.56 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 616 | 15.61 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 636 | 15.61 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 637 | 15.61 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 780 | 15.67 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 781 | 15.67 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 810 | 15.68 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 840 | 15.69 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 874 | 15.70 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 0 | NA |
| 879 | 15.70 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 960 | 15.71 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 15 |