BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0597300 Os12g0597300|AK066276
(749 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 178 8e-45
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 157 2e-38
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 138 1e-32
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/500 (26%), Positives = 226/500 (45%), Gaps = 33/500 (6%)
Query: 205 KSDKTRFTAKCSADGCPWRIHAAKLPGVPTFSIRTIHDNHSCVGINHLGHQQASVQWVAN 264
+++K +T +C C W + AA++ I H+C +H ++ A+
Sbjct: 216 ETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYTGPHTC---SHEYPNDFESEFAAD 272
Query: 265 TVEERLRENPHCKPKEILEEIHKSHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYC 324
+E +R P E+ + + G L + GK ++ V G ++ +R++P+
Sbjct: 273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLI 332
Query: 325 RQVERTNPGSI---ARVYGNPDDNCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYL 381
+N + ++ NPD FR +F SF SI GF CRPLI +D L KY
Sbjct: 333 SAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGF-QHCRPLIVVDTKSLNGKYQ 391
Query: 382 GTLFLATGFDGDGALFPLAFGVVDEESDENWIWFLSELHELLEKNTENMPRLTILSDRRK 441
L +A+G D FPLAF V E S ++W WF +++ E + + + L ++S +
Sbjct: 392 LKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQRKD----LCLISSPLR 447
Query: 442 GIIDGVD-----FNFPTAFHGHCMRSLSETFRKEFNNSVLVNLLWEAANALTVIEFETKL 496
I+ V+ + P A H C+ L F F + L +L+ +A + EF++ +
Sbjct: 448 DIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYM 507
Query: 497 LEIEDTSPEAVCWIRRLPPRLWATAYFEGTRYGHLTANITESLNSWILDASGLPIIQMME 556
+I++ +PEA W+ ++P WA A+ G RYG + + E+L G P +
Sbjct: 508 NDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGIIEID-REAL---FAVCRGFPYCTV-- 561
Query: 557 CIRRQLMTWFNERREASMQWTTILVPAAER----------RVQEAIERARGYQVARANEA 606
+ +M F+E R + + + + + R +++E + + Y + +
Sbjct: 562 AMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERD 621
Query: 607 EFEVISPHEGTN-IVDIRNRCCLCRGWQLYGVPCAHGVAALLSCRQNVHRYTESCFTVAT 665
F+V E IV + C CR +Q Y PC H +A + N +Y + C+TV
Sbjct: 622 SFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQ 681
Query: 666 YRKTYSQTIHPIPDKTLWNE 685
Y KTY+ T P+PD W E
Sbjct: 682 YCKTYAATFSPVPDVAAWPE 701
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/552 (25%), Positives = 238/552 (43%), Gaps = 56/552 (10%)
Query: 176 VGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVPTF 235
VG F D+ ++A+ +I + +++K + +C C W I A++ F
Sbjct: 182 VGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLF 241
Query: 236 SIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITL-- 293
I H C HL A + +E +R P E+ + K G L
Sbjct: 242 EITECSGPHDCYP-EHLNDFDAEC--IPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQ 298
Query: 294 -----SYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYG----NPDD 344
S K + + G +++ +RL+P+ + +N + Y +P+
Sbjct: 299 VVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMSVLHSSNGLLVDWQYDSLTHDPEH 358
Query: 345 NCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVV 404
FR LF +F SI GF + CRPLI +D L KY L +A+ FD FPLAF V
Sbjct: 359 ASFRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVT 417
Query: 405 DEESDENWIWFLSELHELLEKNTENMPRLTILSDRRKGII-----DGVDFNFPTAFHGHC 459
E S ++W WFL+ + E + + + ++S I+ G + P A+H C
Sbjct: 418 KEVSVDSWRWFLTRIREKVTQRQ----GICLISSPDPDILAVINEPGSQWKEPWAYHRFC 473
Query: 460 MR-------SLSETFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRR 512
+ S+S F ++N LV+ EA ++ EF++ + EI++ +PEA W+ +
Sbjct: 474 LYHLCSKLCSVSPGF--DYNMHFLVD---EAGSSSQKEEFDSYMKEIKERNPEAWKWLDQ 528
Query: 513 LPPRLWATAYFEGTRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNER--- 569
PP WA A+ +G RYG + + TE+L + + + + + QL F E
Sbjct: 529 FPPHQWALAHDDGRRYGIMRID-TEALFAVCKRFRKVAMAGGVMLLFGQLKDAFAESFKL 587
Query: 570 REASMQWTTILVPAAERRVQE-------------AIERARGYQVARANEAEFEVI--SPH 614
S++ + +++E +ER YQV+ A + + ++ S
Sbjct: 588 SRGSLKHGDVYTEHVMEKLEEFETDSDTWVITITPLERD-AYQVSMAPKKKTRLMGQSND 646
Query: 615 EGTNIVDIRNRCCLCRGWQLYGVPCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTI 674
+ IV + + C C +Q PC H +A + N +Y + C+TV Y KTYS
Sbjct: 647 STSGIVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKF 706
Query: 675 HPIPDKTLWNET 686
P+P+ + W E
Sbjct: 707 SPVPELSAWPEA 718
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/535 (23%), Positives = 220/535 (41%), Gaps = 35/535 (6%)
Query: 174 LVVGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVP 233
L VG F D ++A+ ++ + ++ K + +C C W + AA++
Sbjct: 192 LRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHG 251
Query: 234 TFSIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITL 293
I H+C + + + ++ + +E +R P E+ + K G L
Sbjct: 252 LVEIIKYTGPHTC---HPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYEL 308
Query: 294 SYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYG---NPDDNCFRRL 350
KE+ + V G +++ + P+ + +N + Y NP+ F +
Sbjct: 309 ETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGV 368
Query: 351 FISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVVDEESDE 410
F +F SI GF CRPLI +D L +Y L +A+G D FPLAF V E S +
Sbjct: 369 FWAFPQSIEGF-QHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTD 427
Query: 411 NWIWFLSELHELLEKNTENMPRLTILSDRRKGII-----DGVDFNFPTAFHGHCMRSLSE 465
W WFL+ + E + + L ++S II G + P A+H +
Sbjct: 428 IWRWFLTGIREKVTQRKG----LCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYS 483
Query: 466 TFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWATAYFEG 525
F + F + L + A + EF + + +I++ +PEA W+ + P WA A+ G
Sbjct: 484 QFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNG 543
Query: 526 TRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERRE----------ASMQ 575
RYG + +N+ L A Q + ++ F+E R +S+
Sbjct: 544 RRYGIM------EINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLN 597
Query: 576 WTTILVPAAERRVQE--AIERARGYQVARANEAEFEVISP-HEGTNIVDIRNRCCLCRGW 632
+ +++E Y V + F+V + +G IV + + C C +
Sbjct: 598 CGDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCGDF 657
Query: 633 QLYGVPCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETS 687
Q Y PC H +A + N +Y + C+T+ ++TY+ +P+ + W E S
Sbjct: 658 QRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEAS 712
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,826,585
Number of extensions: 641308
Number of successful extensions: 1509
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 4
Length of query: 749
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 643
Effective length of database: 8,200,473
Effective search space: 5272904139
Effective search space used: 5272904139
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)