Os12g0597000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1).
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Os12g0597000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.65 | 0.4 | 8.72 | -0.811 | 1.56 | 1.4 | -0.0721 | -0.737 | 0.281 | 4.01 | 19.84 | 10 | -- | -- |
| 74.83 | 0.403 | 8.72 | -0.796 | 1.58 | 1.35 | -0.565 | -- | 0.28 | 3.87 | 20 | 10 | -- | -- |
| 72.66 | 0.397 | 8.72 | -0.811 | 1.56 | 1.4 | -- | -0.762 | 0.281 | 4.01 | 19.84 | 10 | -- | -- |
| 75.76 | 0.405 | 8.72 | -0.793 | 1.56 | 1.37 | -- | -- | 0.279 | 3.94 | 20 | 10 | -- | -- |
| 88.33 | 0.438 | 8.72 | -0.734 | -- | 2.21 | -- | -0.579 | 0.339 | -- | 6.344 | 248 | -- | -- |
| 107.89 | 0.487 | 8.75 | -0.84 | 2.58 | -- | -0.482 | -- | 0.257 | 2.07 | -- | -- | -- | -- |
| 108.77 | 0.488 | 8.75 | -0.826 | 2.58 | -- | -- | -- | 0.26 | 2.07 | -- | -- | -- | -- |
| 90.02 | 0.442 | 8.72 | -0.735 | -- | 2.21 | -- | -- | 0.338 | -- | 6.458 | 248 | -- | -- |
| 91.99 | 0.447 | 8.7 | -- | 1.53 | 1.41 | -- | -- | 0.369 | 4.01 | 20.51 | 10 | -- | -- |
| 507.81 | 1.05 | 8.72 | -0.718 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 126.73 | 0.527 | 8.73 | -- | 2.56 | -- | -- | -- | 0.352 | 2.07 | -- | -- | -- | -- |
| 103.89 | 0.475 | 8.7 | -- | -- | 2.19 | -- | -- | 0.421 | -- | 5.36 | 248 | -- | -- |
| 521.41 | 1.07 | 8.71 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.53 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 2 | 62.78 | radiation | 10.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 4 | 63.46 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 11 | 64.74 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 14 | 65.16 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 15 | 65.18 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 17 | 65.39 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 18 | 65.44 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 28 | 65.84 | radiation | 10.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 55 | 67.54 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 62 | 67.68 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 85 | 68.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 149 | 69.73 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 260 | 71.42 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 271 | 71.59 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 274 | 71.61 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 287 | 71.85 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 289 | 71.90 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 297 | 71.98 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 313 | 72.16 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 318 | 72.21 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 326 | 72.28 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 338 | 72.36 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 341 | 72.39 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 370 | 72.65 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 371 | 72.65 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 376 | 72.67 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 400 | 72.89 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 426 | 73.06 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 453 | 73.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 489 | 73.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 544 | 73.91 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 635 | 74.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 667 | 74.77 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 697 | 74.92 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 756 | 75.19 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 814 | 75.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 907 | 75.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 909 | 75.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 911 | 75.88 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 922 | 75.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 932 | 75.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 963 | 76.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |