Os12g0596900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0596900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.33 | 0.386 | 9.55 | 0.138 | 0.634 | -1.64 | -0.975 | -1.57 | -0.0234 | 23 | 24.96 | 562 | -- | -- |
| 70.55 | 0.391 | 9.58 | -0.103 | 0.631 | -1.48 | -0.819 | -- | -0.0724 | 23.2 | 25.19 | 557 | -- | -- |
| 70.17 | 0.39 | 9.54 | 0.134 | 0.673 | -1.77 | -- | -1.52 | 0.0225 | 22.6 | 23.43 | 551 | -- | -- |
| 72.63 | 0.397 | 9.58 | -0.093 | 0.637 | -1.5 | -- | -- | -0.0752 | 22.6 | 24.99 | 597 | -- | -- |
| 91.02 | 0.444 | 9.56 | 0.00267 | -- | -1.88 | -- | -1.01 | -0.121 | -- | 26 | 719 | -- | -- |
| 104.02 | 0.478 | 9.52 | 0.286 | 0.82 | -- | -0.718 | -- | 0.234 | 22.4 | -- | -- | -- | -- |
| 106.01 | 0.482 | 9.51 | 0.316 | 0.827 | -- | -- | -- | 0.237 | 22.2 | -- | -- | -- | -- |
| 92.34 | 0.448 | 9.58 | -0.19 | -- | -1.82 | -- | -- | -0.163 | -- | 26.24 | 727 | -- | -- |
| 72.83 | 0.397 | 9.58 | -- | 0.645 | -1.46 | -- | -- | -0.0616 | 22.5 | 25 | 603 | -- | -- |
| 147.48 | 0.567 | 9.49 | 0.328 | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
| 108.64 | 0.488 | 9.52 | -- | 0.829 | -- | -- | -- | 0.202 | 22.2 | -- | -- | -- | -- |
| 93.21 | 0.45 | 9.57 | -- | -- | -1.78 | -- | -- | -0.13 | -- | 26.2 | 723 | -- | -- |
| 150.31 | 0.572 | 9.5 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 3 | 66.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 17 | 66.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 20 | 66.57 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 34 | 66.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 74 | 67.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 118 | 68.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 119 | 68.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 120 | 68.32 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 138 | 68.55 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 141 | 68.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 152 | 68.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 161 | 68.73 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 214 | 69.08 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 16 |
| 237 | 69.23 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 7 |
| 251 | 69.29 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 253 | 69.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 296 | 69.54 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 298 | 69.54 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 10 |
| 369 | 69.95 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 377 | 69.99 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 454 | 70.29 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 488 | 70.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 532 | 70.67 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 23 |
| 540 | 70.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 541 | 70.69 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 565 | 70.78 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 591 | 70.89 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 639 | 71.05 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 22 |
| 643 | 71.06 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |
| 648 | 71.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 715 | 71.34 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 748 | 71.44 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 810 | 71.68 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 853 | 71.83 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 865 | 71.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 885 | 72.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 903 | 72.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 964 | 72.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 978 | 72.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |