Os12g0580500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0580500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.76 | 0.174 | 11.8 | 0.393 | 0.17 | -0.376 | 0.0657 | -0.385 | 0.102 | 12.5 | 11.44 | 212 | -- | -- |
| 13.92 | 0.174 | 11.8 | 0.396 | 0.158 | -0.353 | -0.104 | -- | 0.106 | 12.5 | 11.97 | 226 | -- | -- |
| 13.77 | 0.173 | 11.8 | 0.393 | 0.169 | -0.375 | -- | -0.331 | 0.103 | 12.5 | 12.07 | 209 | -- | -- |
| 13.96 | 0.174 | 11.8 | 0.395 | 0.161 | -0.357 | -- | -- | 0.104 | 12.6 | 11.34 | 226 | -- | -- |
| 14.64 | 0.178 | 11.8 | 0.385 | -- | -0.258 | -- | -0.319 | 0.0982 | -- | 22.04 | 226 | -- | -- |
| 16.07 | 0.188 | 11.8 | 0.382 | 0.0745 | -- | 0.015 | -- | 0.0761 | 6.27 | -- | -- | -- | -- |
| 16.08 | 0.188 | 11.8 | 0.382 | 0.0745 | -- | -- | -- | 0.0761 | 6.33 | -- | -- | -- | -- |
| 14.63 | 0.178 | 11.8 | 0.368 | -- | -0.288 | -- | -- | 0.109 | -- | 4.755 | 3700 | -- | -- |
| 17.99 | 0.198 | 11.8 | -- | 0.141 | -0.343 | -- | -- | 0.0556 | 12.1 | 15 | 206 | -- | -- |
| 16.36 | 0.189 | 11.8 | 0.384 | -- | -- | -- | -- | 0.0777 | -- | -- | -- | -- | -- |
| 19.93 | 0.209 | 11.8 | -- | 0.0799 | -- | -- | -- | 0.0335 | 6.07 | -- | -- | -- | -- |
| 16.92 | 0.192 | 11.8 | -- | -- | -0.327 | -- | -- | 0.133 | -- | -22.77 | 26700 | -- | -- |
| 20.26 | 0.21 | 11.9 | -- | -- | -- | -- | -- | 0.035 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 2 | 13.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 4 | 13.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 5 | 13.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 11 | 13.52 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 12 | 13.55 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 13 | 13.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 17 | 13.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 19 | 13.67 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 21 | 13.68 | radiation | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 23 | 13.68 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 25 | 13.69 | radiation | 20 | 270 | < th | dose independent | sin | 3 | NA |
| 26 | 13.69 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 27 | 13.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 30 | 13.70 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 42 | 13.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 47 | 13.73 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 51 | 13.74 | radiation | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 56 | 13.75 | radiation | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 77 | 13.79 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 99 | 13.81 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 103 | 13.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 126 | 13.84 | radiation | 40 | 270 | < th | dose dependent | sin | 2 | NA |
| 141 | 13.85 | radiation | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 168 | 13.87 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 22 |
| 205 | 13.89 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 8 |
| 278 | 13.91 | radiation | 10 | 270 | > th | dose dependent | no | NA | NA |
| 392 | 13.91 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 393 | 13.92 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 396 | 13.92 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 397 | 13.92 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 12 |
| 399 | 13.92 | radiation | 20 | 270 | < th | dose independent | rect. | 16 | 23 |
| 409 | 13.93 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 420 | 13.94 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 456 | 13.95 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 482 | 13.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 485 | 13.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 487 | 13.97 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 528 | 13.98 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 569 | 13.99 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 584 | 14.00 | radiation | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 597 | 14.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 605 | 14.01 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 872 | 14.03 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 879 | 14.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 880 | 14.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 942 | 14.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 944 | 14.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 969 | 14.06 | radiation | 10 | 30 | < th | dose independent | rect. | 8 | 6 |
| 987 | 14.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 11 |