BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0580500 Os12g0580500|AK106472
(341 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G14850.1 | chr2:6386400-6387275 FORWARD LENGTH=292 167 9e-42
AT4G33890.1 | chr4:16250057-16251085 FORWARD LENGTH=343 154 9e-38
AT4G31440.1 | chr4:15253731-15254870 FORWARD LENGTH=380 142 3e-34
AT2G24530.1 | chr2:10422597-10423820 FORWARD LENGTH=408 139 3e-33
AT5G67410.1 | chr5:26896600-26897463 REVERSE LENGTH=288 115 4e-26
>AT2G14850.1 | chr2:6386400-6387275 FORWARD LENGTH=292
Length = 291
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 169/321 (52%), Gaps = 61/321 (19%)
Query: 11 ARVDTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFL 70
+R++++EIK+ I +K+G +R++ YF L KFL ++ K EFDK+C T+GR+NI HN L
Sbjct: 8 SRLNSLEIKALIYQKIGHQRADTYFDQLGKFLTSRISKSEFDKLCSKTVGRENISLHNRL 67
Query: 71 IRSILSNAYLATAXXXXXXXSRQATTGNSQTSTVSVSNGAVANHGVMAGVMRGPALATRE 130
+RSIL NA + A +++ G+ V R
Sbjct: 68 VRSILKNA--SVAKSPPPRYPKKSLYGDP--------------------VFPPSPRKCRS 105
Query: 131 ARF-ERPSPLGKSPLGHQGT-----GEFVSAGSKAPLEVVSVEDGEEVNQAGGSPVYAQS 184
+F +RPSPLG PLG + E +S + P+EVVSVEDGEEV Q GSP QS
Sbjct: 106 RKFRDRPSPLG--PLGKPQSLTTTNDESMSKAQRLPMEVVSVEDGEEVEQMTGSP-SVQS 162
Query: 185 RSPIRAPLGVSFG-DPKAQNSRPSIPHPSLICYKNGELPEAQRLLKLLENKLQAEGLSLT 243
RSP+ APLGVSF KA+ S + + C +GELP+ L LE KL+ EG+ L+
Sbjct: 163 RSPLTAPLGVSFHLKSKARFSTYNGINRE-TCQSSGELPDMITLRARLEKKLEMEGIKLS 221
Query: 244 QECADVLNSGLNAYLSRLLKSCMGVAKSRGKRVMMNYPNVTTVAVINGVQYQRSTGSADY 303
+ A++LN GLNAY+ RL++ C+ +A S+ KR + N
Sbjct: 222 MDSANLLNRGLNAYMRRLIEPCLSLA-SQQKRAVSN------------------------ 256
Query: 304 SYQASLLDLETAVVCNPQLLG 324
S+LD A+ NP++LG
Sbjct: 257 ---VSMLDFHAAMEVNPRVLG 274
>AT4G33890.1 | chr4:16250057-16251085 FORWARD LENGTH=343
Length = 342
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 183/353 (51%), Gaps = 46/353 (13%)
Query: 10 AARVDTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNF 69
++R+DT+EIK+ I +++G +R+E YF+ L +F ++ K EFDK+C+ T+GR NI HN
Sbjct: 7 SSRLDTLEIKALIYREIGNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNR 66
Query: 70 LIRSILSNAYLATAXXXXXXXSRQATTGNSQTSTVSVSNGAVAN-HGVMAGVMRGPALAT 128
LIRSI+ NA +A + GN S N + HG A +
Sbjct: 67 LIRSIIKNACIAKSPPFIKKGGSFVRFGNGD----SKKNSQIQPLHGDSAFSPSTRKCRS 122
Query: 129 REARFERPSPLGKSPLGH---------------QGTGEFVSAGSKAPLEVVSVEDGEEVN 173
R+ R +RPSPLG PLG Q E +S GS+ P+EVVSVE+GEEV
Sbjct: 123 RKLR-DRPSPLG--PLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEVE 179
Query: 174 Q-AGGSPVYAQSRSPIRAPLGVSFGDPKAQNSRPSIPHPSLI--------CYKNGELPEA 224
Q AGGSP QSR P+ APLGVS + +R S+ + S+ C NGELP+
Sbjct: 180 QIAGGSP-SVQSRCPLTAPLGVSMS-LRNGATRKSVSNVSMCSRSFNRETCQNNGELPDT 237
Query: 225 QRLLKLLENKLQAEGLSLTQECADVLNSGLNAYLSRLLKSCMGVAKSRGKRVMMNYPNVT 284
+ L LE +L+ EGL +T + +LNSGL+ ++ RL++ C+ +A +R
Sbjct: 238 RTLRSRLERRLEMEGLKITMDSVSLLNSGLDVFMRRLIEPCLSLANTR-----------C 286
Query: 285 TVAVINGVQYQRSTGSADYSYQASLLDLETAVVCNPQLLGGNSSRVRDKISAH 337
+ + YQ + S SY S+ D + N ++LG + +KI +
Sbjct: 287 GTDRVREMNYQYTQQSRRLSY-VSMSDFRAGMELNTEILGEDWPMHMEKICSR 338
>AT4G31440.1 | chr4:15253731-15254870 FORWARD LENGTH=380
Length = 379
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 176/371 (47%), Gaps = 48/371 (12%)
Query: 12 RVDTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFLI 71
R+D E+K I KK+G ERS YF+ L +FL +L K EFDK C +GR+N+ HN LI
Sbjct: 8 RIDLAELKVHIVKKVGVERSTRYFYYLGRFLSQKLTKSEFDKSCFRLLGRENLSLHNKLI 67
Query: 72 RSILSNAYLATAXXXXXXXSRQATT-------GNSQTSTVS---VSNGAVANHGVMAGVM 121
RSIL NA LA + + G ++ +++ + N ++GV+A V
Sbjct: 68 RSILRNASLAKSPPSVHQSGHPGKSLVLGKEDGPEESRSLNPDHIRNDLALSNGVLAKVR 127
Query: 122 RGPALATREARFERPSPLGKS-----PLGHQGTGEFVSAGSKA---PLEVVSVEDGEEVN 173
G R R ++P PLG + P + G + A P E +V ++V
Sbjct: 128 PG-TCDDRTIR-DKPCPLGSNGKVLGPFAYSRPGRYPDERDSAFLCPAEQKAVSGKDQVA 185
Query: 174 QAGGSPVYAQSR----SPIRAPLGVSFGDPKAQNSRPSIP----HPSLICYKNGELPEAQ 225
AQ R P+ APLG+ F R ++P ++ CY +G L + +
Sbjct: 186 APISRDDEAQVRILSTPPVMAPLGIPFCSASVGGDRRTVPVSTSAAAISCYDSGGLSDTE 245
Query: 226 RLLKLLENKLQAEGL-SLTQECADVLNSGLNAYLSRLLKSCMGVAKSRGKRVMMNYPNVT 284
L K +EN +GL ++ EC+ VLN+ L+ YL +L+KSC+ +A G R M P
Sbjct: 246 MLRKRMENIAVTQGLGGVSAECSIVLNNMLDLYLKKLMKSCVDLA---GARSMNGTPGKH 302
Query: 285 TV-------AVINGVQ------YQRSTGSADYS---YQASLLDLETAVVCNPQLLGGNSS 328
++ ++NGV+ Q S +D + + SLLD A+ NP LG +
Sbjct: 303 SLEKQQSRDELVNGVRTNNSFHIQTSNQPSDITREQHSVSLLDFRVAMELNPHQLGEDWP 362
Query: 329 RVRDKISAHLL 339
+R++IS L
Sbjct: 363 LLRERISISLF 373
>AT2G24530.1 | chr2:10422597-10423820 FORWARD LENGTH=408
Length = 407
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 180/392 (45%), Gaps = 71/392 (18%)
Query: 12 RVDTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFLI 71
R+ E+K I KK G ERS YF+ L +FL +L K EFDK C+ +GR+N+ HN LI
Sbjct: 8 RISLCELKEHIVKKTGVERSRRYFYYLGRFLSQKLTKSEFDKTCLRLLGRENLSLHNQLI 67
Query: 72 RSILSNAYLATAX--XXXXXXSRQATTGNSQTSTVSVSNGAVANHGVMAGVMRGPAL--- 126
RSIL NA +A + S +A S+ + S + NH V L
Sbjct: 68 RSILRNATVAKSPPPDHEAGHSTKANAFQSRGDGLEQSGTLIPNHSQHEPVWSNGVLPIS 127
Query: 127 --------ATREARFERPSPLGKS---------PL--------------GHQGTGEFVSA 155
R++R +RPSPLG + P+ +Q +G +V+
Sbjct: 128 PRKVRSGMQNRKSR-DRPSPLGSNGKVEHMLHQPVCREDNRGSVGMENGDYQRSGRYVAD 186
Query: 156 GSKA----PLEVVSVEDGEEV---------NQAGGSPVYAQSRSPIRAPLGVSFGDPKAQ 202
P+E + + E++ NQ + V S SP+ APLG+ F
Sbjct: 187 EKDGEFLRPVEKPRIPNKEKIAAVSMRDDQNQEEQARVNL-SMSPLIAPLGIPFCSASVG 245
Query: 203 NSRPSIP---HPSLI-CYKNGELPEAQRLLKLLENKLQAEGLS-LTQECADVLNSGLNAY 257
S +IP + LI CY +G LP+ + L K +EN A+GL ++ ECA LN+ L+ Y
Sbjct: 246 GSPRTIPVSTNAELISCYDSGGLPDIEMLRKRMENIAVAQGLEGVSMECAKTLNNMLDVY 305
Query: 258 LSRLLKSCMGVAKSR-----------GKRVMMNYPNVTTVAVINGVQYQRSTGSADY--- 303
L +L+ SC + +R GK+ N V V N ++ Q GS+D
Sbjct: 306 LKKLINSCFDLVGARSTNGDPGKQRIGKQQSQNKI-VNGVWPTNSLKIQTPNGSSDIRQD 364
Query: 304 SYQASLLDLETAVVCNPQLLGGNSSRVRDKIS 335
+ S+LD TA+ NP+ LG + +R++IS
Sbjct: 365 HHSVSMLDFRTAMELNPRQLGEDWPTLRERIS 396
>AT5G67410.1 | chr5:26896600-26897463 REVERSE LENGTH=288
Length = 287
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 23/263 (8%)
Query: 4 PVAKKVAARVDTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDN 63
P ++ R D E+KSQI K++G ++E Y + L KFL ++ K +FDK+ + T+ R+N
Sbjct: 2 PTSQHHVVRTDISELKSQIEKRIGRAKTESYLNLLSKFLSLKISKSDFDKLIIVTVKREN 61
Query: 64 IKYHNFLIRSILSNAYLATAXXXXXXXSRQATTGNSQTSTVSVSNGAVANHGVMAGVMRG 123
I HN L+R IL N L+ + N + + NGA + + R
Sbjct: 62 ISLHNALLRGILKNICLSKTLPPFVKNG--VESDNKKKKQL---NGAF--QSLCKELPRS 114
Query: 124 PALATREARFERPSPLGKSPLGHQGTGEFVSAGSKAPLEVVSVEDGEEVNQAGGSPVYAQ 183
P + R + + K G E VS+ + + S+E+ EEV+Q +
Sbjct: 115 PRKGRTQRRLNKDGNISK---GKSLVTEVVSSSGR---QQWSMENVEEVDQL----IPCW 164
Query: 184 SRSPIRAPLGVSFGDPKAQNSRPSIPHPSLICYKNGELPEAQRLLKLLENKLQAEGLSLT 243
PI AP GV+ D + R CY +GELP++ L K LE+ L+ EGL ++
Sbjct: 165 RSQPIEAPFGVNLRDVIKKQHRIDT-----CCYSSGELPDSVSLKKKLEDDLE-EGLEVS 218
Query: 244 QECADVLNSGLNAYLSRLLKSCM 266
A+ LN+GL+ +L RL+K C+
Sbjct: 219 VGFANSLNAGLDVFLKRLIKPCL 241
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,894,440
Number of extensions: 281184
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)