Os12g0572800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os12g0572800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.27 | 0.461 | 2.92 | -0.117 | 0.162 | -0.435 | -0.0674 | 1.57 | -0.0731 | 11.3 | 1.025 | 15 | -- | -- |
| 98.17 | 0.461 | 2.91 | -0.0722 | 0.166 | -0.356 | 0.0422 | -- | -0.0492 | 11.5 | 1.2 | 28 | -- | -- |
| 96.29 | 0.457 | 2.92 | -0.12 | 0.162 | -0.437 | -- | 1.55 | -0.0731 | 11.5 | 1.026 | 14 | -- | -- |
| 98.18 | 0.461 | 2.91 | -0.0702 | 0.165 | -0.351 | -- | -- | -0.0489 | 11.3 | 1.19 | 28 | -- | -- |
| 97.91 | 0.461 | 2.93 | -0.12 | -- | -0.404 | -- | 1.56 | -0.0751 | -- | 1.045 | 14 | -- | -- |
| 100.71 | 0.47 | 2.91 | -0.0167 | 0.173 | -- | -0.149 | -- | -0.0607 | 8.7 | -- | -- | -- | -- |
| 100.77 | 0.47 | 2.91 | -0.021 | 0.173 | -- | -- | -- | -0.0604 | 8.96 | -- | -- | -- | -- |
| 99.62 | 0.465 | 2.91 | -0.0668 | -- | -0.308 | -- | -- | -0.0556 | -- | 1.1 | 16 | -- | -- |
| 98.31 | 0.462 | 2.9 | -- | 0.165 | -0.342 | -- | -- | -0.0425 | 11.3 | 1.1 | 31 | -- | -- |
| 102.49 | 0.473 | 2.91 | -0.0212 | -- | -- | -- | -- | -0.0593 | -- | -- | -- | -- | -- |
| 100.79 | 0.47 | 2.91 | -- | 0.173 | -- | -- | -- | -0.0581 | 8.97 | -- | -- | -- | -- |
| 99.73 | 0.465 | 2.91 | -- | -- | -0.299 | -- | -- | -0.0495 | -- | 1.134 | 16 | -- | -- |
| 102.5 | 0.473 | 2.91 | -- | -- | -- | -- | -- | -0.0569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.88 | humidity | 60 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 2 | 82.15 | humidity | 60 | 90 | < th | dose independent | rect. | 17 | 16 |
| 15 | 82.81 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 41 | 82.81 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 67 | 82.83 | wind | 1 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 70 | 82.92 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 83 | 82.93 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 90 | 82.94 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 114 | 82.99 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 117 | 83.01 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 192 | 83.16 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 3 |
| 214 | 83.31 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 307 | 83.33 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 356 | 83.35 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 421 | 83.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 422 | 83.79 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 8 |
| 457 | 83.94 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 489 | 84.07 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 569 | 84.83 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 590 | 84.95 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 846 | 86.48 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 847 | 86.48 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 859 | 86.59 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 980 | 87.96 | radiation | 40 | 10 | > th | dose independent | sin | 12 | NA |