Os12g0567200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Diaminopimelate epimerase family protein.
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Os12g0567200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Diaminopimelate epimerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.27 | 0.206 | 11.1 | 0.16 | 0.384 | 0.488 | -0.000448 | -0.406 | -0.301 | 1.56 | 24.97 | 83 | -- | -- |
| 19.35 | 0.205 | 11.1 | 0.197 | 0.38 | 0.459 | 0.0481 | -- | -0.299 | 1.38 | 24.9 | 78 | -- | -- |
| 19.27 | 0.204 | 11.1 | 0.16 | 0.384 | 0.489 | -- | -0.407 | -0.301 | 1.55 | 24.98 | 82 | -- | -- |
| 19.33 | 0.205 | 11.1 | 0.208 | 0.379 | 0.454 | -- | -- | -0.289 | 1.52 | 24.96 | 83 | -- | -- |
| 22.51 | 0.221 | 11.1 | 0.254 | -- | 0.337 | -- | 0.218 | -0.272 | -- | 24.2 | 892 | -- | -- |
| 22.66 | 0.223 | 11.1 | 0.285 | 0.239 | -- | 0.0203 | -- | -0.251 | 23.9 | -- | -- | -- | -- |
| 22.67 | 0.223 | 11.1 | 0.284 | 0.239 | -- | -- | -- | -0.251 | 24 | -- | -- | -- | -- |
| 22.5 | 0.221 | 11.1 | 0.197 | -- | 0.362 | -- | -- | -0.295 | -- | 23.76 | 878 | -- | -- |
| 20.44 | 0.211 | 11.1 | -- | 0.4 | 0.506 | -- | -- | -0.323 | 1.71 | 24.45 | 99 | -- | -- |
| 26.27 | 0.24 | 11.1 | 0.292 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 24.8 | 0.233 | 11.1 | -- | 0.243 | -- | -- | -- | -0.283 | 0.0302 | -- | -- | -- | -- |
| 23.06 | 0.224 | 11.1 | -- | -- | 0.48 | -- | -- | -0.352 | -- | 17.5 | 900 | -- | -- |
| 28.52 | 0.249 | 11.1 | -- | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 6 | 18.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 10 | 18.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 31 | 19.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 33 | 19.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 51 | 19.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 109 | 19.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 115 | 19.26 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 117 | 19.26 | temperature | 20 | 720 | > th | dose dependent | sin | 1 | NA |
| 119 | 19.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 130 | 19.26 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 132 | 19.27 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 142 | 19.27 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 253 | 19.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 276 | 19.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 11 |
| 483 | 19.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 496 | 19.49 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 639 | 19.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 656 | 19.55 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 694 | 19.57 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 957 | 19.71 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 9 |
| 978 | 19.71 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 23 |