BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0567200 Os12g0567200|J100054J22
         (68 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53580.1  | chr3:19864784-19866907 FORWARD LENGTH=363           92   7e-20

>AT3G53580.1 | chr3:19864784-19866907 FORWARD LENGTH=363
          Length = 362

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/44 (86%), Positives = 43/44 (97%)

Query: 24  LEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGSAV 67
           LEGRA+RKC VDLPGGPLEIEW+++DNHIYMTGPAEAVFYGSA+
Sbjct: 318 LEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSAL 361



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,197,328
Number of extensions: 31799
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)