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Os12g0566400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0112) R2 : 0.112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0235) R2dN8 : 0.144 R2N8 : 0.112
σ : 0.21
deviance : 20.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.24 0.157 11.1 -1.64 0.344 -53.8 -0.124 -112 0.149 0.884 15 4470 -- --
12.16 0.164 11.9 0.0897 0.343 -0.632 -0.109 -- 0.179 0.914 15 4470 -- --
11.3 0.157 11.2 -1.6 0.341 -53.2 -- -110 0.151 0.908 14.99 4466 -- --
11.84 0.16 11.9 -0.00439 0.324 -0.378 -- -- 0.147 0.856 18.93 3036 -- --
18.51 0.2 11.2 -1.59 -- -53.3 -- -110 0.152 -- 14.99 4211 -- --
12.91 0.168 11.9 0.117 0.332 -- -0.0343 -- 0.186 0.943 -- -- -- --
12.91 0.168 11.9 0.118 0.333 -- -- -- 0.186 0.942 -- -- -- --
18.26 0.199 11.9 -0.00814 -- -0.402 -- -- 0.14 -- 19.42 2510 -- --
11.83 0.16 11.9 -- 0.33 -0.37 -- -- 0.145 0.854 19 3032 -- --
19.8 0.208 11.9 0.13 -- -- -- -- 0.192 -- -- -- -- --
13.28 0.17 11.9 -- 0.334 -- -- -- 0.173 0.957 -- -- -- --
18.26 0.199 11.9 -- -- -0.397 -- -- 0.143 -- 19.4 2512 -- --
20.25 0.21 11.9 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.07 radiation 10 90 < th dose independent rect. 5 18
2 11.10 temperature 10 1440 > th dose dependent rect. 19 2
3 11.11 temperature 15 270 > th dose independent rect. 17 14
5 11.11 temperature 30 1440 < th dose dependent rect. 19 2
11 11.13 temperature 20 1440 > th dose independent rect. 12 15
21 11.14 temperature 20 1440 > th dose independent rect. 21 2
22 11.14 temperature 20 1440 < th dose independent rect. 21 2
24 11.14 temperature 20 1440 < th dose independent rect. 12 15
40 11.16 wind 1 43200 < th dose independent rect. 9 2
64 11.18 wind 1 43200 > th dose independent rect. 9 2
82 11.19 temperature 15 1440 > th dose independent rect. 6 18
83 11.19 wind 3 43200 < th dose dependent rect. 10 1
92 11.20 temperature 20 1440 > th dose independent sin 15 NA
110 11.20 temperature 15 4320 < th dose dependent sin 7 NA
121 11.20 temperature 15 4320 < th dose dependent rect. 21 10
128 11.21 temperature 20 1440 < th dose independent sin 15 NA
148 11.21 temperature 15 4320 < th dose dependent rect. 22 8
155 11.21 humidity 50 43200 < th dose dependent rect. 20 12
218 11.23 humidity 90 14400 > th dose independent rect. 23 1
241 11.23 radiation 20 90 < th dose dependent rect. 5 18
252 11.24 humidity 90 14400 < th dose independent rect. 23 1
280 11.24 radiation 20 90 < th dose dependent rect. 5 10
361 11.27 radiation 20 43200 < th dose independent rect. 24 6
466 11.28 temperature 15 4320 < th dose dependent rect. 15 22
482 11.29 radiation 10 90 < th dose independent rect. 5 12
489 11.29 temperature 15 4320 < th dose dependent no NA NA
490 11.29 temperature 25 14400 < th dose dependent rect. 22 1
497 11.29 radiation 40 43200 < th dose dependent rect. 24 5
543 11.30 radiation 1 14400 < th dose independent rect. 18 11
544 11.30 radiation 10 270 < th dose independent rect. 5 14
547 11.30 radiation 10 270 < th dose independent rect. 3 18
548 11.30 temperature 20 14400 > th dose independent rect. 20 19
551 11.30 temperature 20 14400 < th dose independent rect. 12 20
552 11.30 temperature 20 1440 > th dose independent rect. 20 21
555 11.30 temperature 20 1440 < th dose independent rect. 20 21
566 11.30 humidity 50 43200 < th dose dependent rect. 5 3
570 11.30 radiation 10 4320 < th dose dependent rect. 24 5
579 11.30 radiation 1 4320 < th dose dependent rect. 18 11
586 11.31 temperature 20 14400 > th dose independent no NA NA
587 11.31 temperature 20 14400 < th dose independent no NA NA
592 11.31 radiation 20 90 < th dose independent rect. 5 10
596 11.31 temperature 20 14400 < th dose independent rect. 14 16
600 11.31 temperature 20 14400 > th dose independent rect. 20 17
602 11.31 temperature 20 14400 < th dose independent rect. 12 17
607 11.31 temperature 20 14400 > th dose independent rect. 13 18
616 11.31 temperature 20 14400 < th dose independent rect. 20 18
635 11.31 temperature 20 14400 < th dose independent rect. 2 20
645 11.31 temperature 20 14400 > th dose independent rect. 1 21
668 11.31 temperature 20 1440 > th dose independent rect. 5 22
674 11.31 temperature 20 14400 > th dose independent rect. 17 22
701 11.31 temperature 20 14400 > th dose independent rect. 15 23
728 11.31 radiation 10 270 < th dose independent rect. 24 23
759 11.32 temperature 20 14400 < th dose independent sin 13 NA
768 11.32 temperature 20 14400 < th dose independent rect. 16 13
772 11.32 temperature 20 14400 > th dose independent rect. 14 15
774 11.32 temperature 20 14400 > th dose independent rect. 20 15
780 11.32 temperature 20 14400 < th dose independent rect. 20 15
882 11.32 temperature 20 1440 < th dose independent rect. 5 22
959 11.33 temperature 20 14400 > th dose independent sin 12 NA
961 11.33 temperature 20 1440 > th dose independent no NA NA
962 11.33 temperature 20 14400 < th dose independent sin 11 NA
965 11.33 radiation 10 270 < th dose independent sin 1 NA
973 11.33 radiation 1 4320 > th dose independent rect. 18 11
977 11.33 temperature 20 14400 > th dose independent rect. 16 13