BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0566400 Os12g0566400|AK101409
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03345.1  | chr5:814196-815478 FORWARD LENGTH=105              121   9e-29

>AT5G03345.1 | chr5:814196-815478 FORWARD LENGTH=105
          Length = 104

 Score =  121 bits (303), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query: 20  YATIQYRAVLKITEEEFSSPPMDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIVS 79
           Y+TIQYR +LKI EEEFS PP++V+++L++GLALCMWA L  P KFLS+ P S+ENR V 
Sbjct: 20  YSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKFLSIHPDSDENRAVF 79

Query: 80  LPANLDFMIFNHRGRALPSDPDLKL 104
           LP N DFMIFNHRGR  P   D+K 
Sbjct: 80  LPDNSDFMIFNHRGRLFPPQIDMKF 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,922,827
Number of extensions: 65403
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)