Os12g0566100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
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Os12g0566100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Complex 1 LYR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.41 | 0.263 | 10.4 | -1.11 | 0.234 | 0.597 | 0.24 | -1.33 | -0.397 | 20.7 | 19.82 | 1635 | -- | -- |
| 31.81 | 0.263 | 10.3 | -0.923 | 0.256 | 0.747 | 0.168 | -- | -0.399 | 20.4 | 15.4 | 8987 | -- | -- |
| 31.6 | 0.262 | 10.4 | -1.11 | 0.236 | 0.596 | -- | -1.31 | -0.396 | 20.6 | 19.67 | 1620 | -- | -- |
| 31.9 | 0.263 | 10.3 | -0.929 | 0.249 | 0.721 | -- | -- | -0.389 | 20.3 | 15.13 | 9037 | -- | -- |
| 32.72 | 0.266 | 10.3 | -0.947 | -- | 0.737 | -- | -1.01 | -0.354 | -- | 20.26 | 728 | -- | -- |
| 41.05 | 0.3 | 10.3 | -0.529 | 0.254 | -- | 0.234 | -- | -0.167 | 20.7 | -- | -- | -- | -- |
| 41.23 | 0.301 | 10.3 | -0.536 | 0.254 | -- | -- | -- | -0.167 | 20.6 | -- | -- | -- | -- |
| 33.49 | 0.27 | 10.3 | -0.734 | -- | 0.729 | -- | -- | -0.298 | -- | 18.06 | 735 | -- | -- |
| 45 | 0.314 | 10.3 | -- | 0.307 | 0.472 | -- | -- | -0.168 | 22.9 | 22.97 | 699 | -- | -- |
| 44.85 | 0.313 | 10.3 | -0.537 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 48.81 | 0.327 | 10.3 | -- | 0.256 | -- | -- | -- | -0.108 | 20.4 | -- | -- | -- | -- |
| 44.8 | 0.312 | 10.3 | -- | -- | 0.519 | -- | -- | -0.108 | -- | 26.3 | 760 | -- | -- |
| 52.46 | 0.338 | 10.3 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.36 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 29.58 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 29.69 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 12 | 29.91 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 15 | 29.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 21 | 29.97 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 26 | 30.00 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 36 | 30.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 37 | 30.12 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 51 | 30.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 52 | 30.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 70 | 30.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 80 | 30.29 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 87 | 30.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 96 | 30.34 | humidity | 90.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 114 | 30.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 145 | 30.43 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 173 | 30.47 | humidity | 90.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 201 | 30.52 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 212 | 30.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 270 | 30.63 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 280 | 30.65 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 282 | 30.65 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 290 | 30.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 300 | 30.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 305 | 30.67 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 323 | 30.70 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 324 | 30.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 340 | 30.73 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 354 | 30.75 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 395 | 30.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 405 | 30.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 417 | 30.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 496 | 30.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 501 | 30.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 515 | 30.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 525 | 30.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 534 | 30.94 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 549 | 30.95 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 555 | 30.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 565 | 30.97 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 571 | 30.97 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 574 | 30.97 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 597 | 30.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 617 | 31.01 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 629 | 31.02 | humidity | 80.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 641 | 31.02 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 662 | 31.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 676 | 31.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 690 | 31.05 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 705 | 31.06 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 713 | 31.06 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 719 | 31.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 738 | 31.07 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 840 | 31.13 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 851 | 31.13 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 879 | 31.14 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 897 | 31.15 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 910 | 31.16 | wind | 1.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 913 | 31.16 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 926 | 31.16 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 18 |
| 991 | 31.19 | wind | 9.0 | 43200 | < th | dose dependent | sin | 3 | NA |