BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0566100 Os12g0566100|Os12g0566100
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17300.1  | chr3:5907616-5908695 FORWARD LENGTH=92             115   1e-26

>AT3G17300.1 | chr3:5907616-5908695 FORWARD LENGTH=92
          Length = 91

 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 63/69 (91%)

Query: 54  MPSIQKALPPELADNVIRLYRECLRRARFIGHQKHNTGLIVSMVREQFKKNMHETDPEKI 113
           MPS+Q +LPPELA+NV+RLYRECLRRA+FIG Q+HNT L+V MVR+QFKK+M+ETDPEKI
Sbjct: 1   MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 114 QKMKDEWKR 122
           QK+KD+  R
Sbjct: 61  QKLKDDAAR 69



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,832,360
Number of extensions: 201047
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)