Os12g0565300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-binding protein MPCBP.
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Os12g0565300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-binding protein MPCBP.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.65 | 0.647 | 5.54 | -2.26 | 1.08 | 4.98 | -0.457 | 0.96 | -0.441 | 9.25 | 10.1 | 3510 | -- | -- |
| 181.06 | 0.627 | 5.57 | -2.23 | 1.2 | 4.71 | -0.363 | -- | -0.515 | 9.97 | 11 | 2459 | -- | -- |
| 190.38 | 0.643 | 5.53 | -2.26 | 1.08 | 4.99 | -- | 1.03 | -0.437 | 9.28 | 9.947 | 3510 | -- | -- |
| 181.56 | 0.628 | 5.57 | -2.24 | 1.21 | 4.71 | -- | -- | -0.507 | 9.96 | 11.16 | 2452 | -- | -- |
| 234.34 | 0.713 | 5.54 | -2.35 | -- | 4.89 | -- | 1.45 | -0.396 | -- | 9.419 | 4441 | -- | -- |
| 613.17 | 1.16 | 5.36 | -0.416 | 0.829 | -- | -0.762 | -- | 0.454 | 8.35 | -- | -- | -- | -- |
| 614.98 | 1.16 | 5.36 | -0.439 | 0.829 | -- | -- | -- | 0.454 | 8.42 | -- | -- | -- | -- |
| 235.49 | 0.715 | 5.59 | -2.31 | -- | 4.54 | -- | -- | -0.467 | -- | 12.09 | 2944 | -- | -- |
| 286.8 | 0.789 | 5.49 | -- | 1.01 | 4.22 | -- | -- | -0.103 | 10.2 | 10.78 | 1263 | -- | -- |
| 653.27 | 1.19 | 5.38 | -0.434 | -- | -- | -- | -- | 0.463 | -- | -- | -- | -- | -- |
| 620.05 | 1.16 | 5.35 | -- | 0.827 | -- | -- | -- | 0.503 | 8.46 | -- | -- | -- | -- |
| 324.51 | 0.839 | 5.51 | -- | -- | 3.58 | -- | -- | -0.111 | -- | 17.17 | 1498 | -- | -- |
| 658.25 | 1.2 | 5.37 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 3 | 182.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 4 | 183.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 6 | 184.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 7 | 184.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 10 | 184.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 18 | 185.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 23 | 185.57 | temperature | 15 | 1440 | > th | dose dependent | sin | 6 | NA |
| 68 | 187.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 111 | 188.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 15 |
| 335 | 190.79 | temperature | 30 | 4320 | < th | dose dependent | sin | 8 | NA |
| 535 | 192.61 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 565 | 192.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 589 | 193.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 596 | 193.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 895 | 194.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 924 | 195.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |