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Os12g0563600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0265) R2 : 0.773
β1 : -0.894 (0.0968) R2dD : 0.044 R2D : 0.0333
β2 : 2.6 (0.0677) R2dC : 0.736 R2C : 0.723
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.261 (0.0564) R2dN8 : 0.0143 R2N8 : -0.00502
σ : 0.497
deviance : 112.7
__
_____
C
peak time of C : 7.68
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.45 0.471 11.1 -1.48 2.57 -0.642 -0.618 1.39 -0.585 7.8 24.9 1379 -- --
101.42 0.469 11.1 -1.1 2.65 -0.58 -0.503 -- -0.475 7.9 24.5 1015 -- --
101.54 0.469 11.1 -1.49 2.57 -0.639 -- 1.37 -0.583 7.79 24.82 1380 -- --
102.37 0.471 11.1 -1.1 2.65 -0.557 -- -- -0.478 7.89 24.5 1022 -- --
458.84 0.998 11.1 -1.32 -- -0.676 -- 0.823 -0.48 -- 24.5 1389 -- --
111.71 0.496 11 -0.878 2.59 -- -0.591 -- -0.262 7.7 -- -- -- --
112.7 0.497 11 -0.894 2.6 -- -- -- -0.261 7.68 -- -- -- --
459.91 0.999 11.1 -1.08 -- -0.681 -- -- -0.473 -- 24.5 1395 -- --
130.52 0.532 11 -- 2.61 -0.284 -- -- -0.265 7.81 24.6 1022 -- --
475.51 1.02 11.1 -0.859 -- -- -- -- -0.223 -- -- -- -- --
133.75 0.541 11 -- 2.59 -- -- -- -0.162 7.71 -- -- -- --
354.31 0.877 10.9 -- -- 1.61 -- -- 0.292 -- 26.4 532 -- --
494.99 1.04 11.1 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.70 temperature 10.0 270 > th dose dependent rect. 18 13
5 91.68 wind 7.0 720 < th dose independent rect. 7 3
6 91.89 temperature 10.0 720 > th dose dependent rect. 4 1
7 91.96 radiation 10.0 270 < th dose independent rect. 18 13
8 92.04 temperature 10.0 720 > th dose dependent rect. 4 3
9 92.36 temperature 10.0 720 > th dose dependent rect. 19 3
13 92.67 radiation 40.0 720 < th dose dependent rect. 19 12
16 92.80 temperature 30.0 720 < th dose dependent rect. 22 4
22 92.97 temperature 30.0 720 < th dose dependent rect. 23 2
24 92.99 wind 1.0 720 > th dose independent rect. 7 3
25 93.04 atmosphere 995.0 720 > th dose dependent rect. 7 3
26 93.06 wind 9.0 720 < th dose independent rect. 19 3
27 93.16 temperature 10.0 720 > th dose dependent rect. 2 5
30 93.22 temperature 10.0 720 > th dose independent rect. 19 3
31 93.22 temperature 30.0 720 < th dose independent rect. 19 3
32 93.22 humidity 50.0 720 > th dose independent rect. 19 3
33 93.22 atmosphere 995.0 720 > th dose independent rect. 19 3
34 93.22 radiation 1.0 720 < th dose independent rect. 19 3
39 93.22 precipitation 0.1 720 < th dose independent rect. 7 3
40 93.22 temperature 10.0 720 > th dose independent rect. 22 21
41 93.22 radiation 1.0 720 < th dose dependent rect. 19 3
46 93.22 precipitation 0.1 720 < th dose dependent rect. 7 3
47 93.24 temperature 30.0 270 < th dose dependent rect. 22 11
50 93.31 temperature 10.0 720 > th dose independent rect. 7 3
51 93.31 atmosphere 995.0 720 > th dose independent rect. 7 3
52 93.31 atmosphere 1015.0 720 < th dose independent rect. 7 3
53 93.31 temperature 10.0 720 > th dose independent rect. 10 21
56 93.36 precipitation 0.1 720 < th dose independent rect. 19 3
57 93.36 precipitation 0.1 720 < th dose dependent rect. 19 3
61 93.46 atmosphere 1015.0 720 < th dose independent rect. 19 3
63 93.50 wind 9.0 720 < th dose independent rect. 19 12
65 93.52 temperature 10.0 10 > th dose dependent rect. 20 13
69 93.62 temperature 30.0 720 < th dose independent rect. 7 3
70 93.62 humidity 50.0 720 > th dose independent rect. 7 3
72 93.64 wind 9.0 270 < th dose independent rect. 7 11
73 93.66 temperature 10.0 720 > th dose independent rect. 7 12
74 93.66 temperature 10.0 720 > th dose independent rect. 19 12
75 93.66 temperature 30.0 720 < th dose independent rect. 19 12
76 93.66 humidity 50.0 720 > th dose independent rect. 19 12
77 93.66 atmosphere 995.0 720 > th dose independent rect. 19 12
78 93.66 atmosphere 1015.0 720 < th dose independent rect. 7 12
97 94.10 temperature 20.0 720 > th dose independent rect. 19 3
103 94.19 precipitation 0.1 720 < th dose independent rect. 19 12
104 94.19 precipitation 0.1 720 < th dose dependent rect. 19 12
107 94.27 wind 9.0 720 < th dose dependent rect. 19 3
117 94.71 radiation 1.0 720 > th dose independent rect. 7 3
118 94.76 temperature 25.0 30 < th dose independent sin 7 NA
121 94.81 temperature 20.0 270 > th dose independent rect. 18 13
126 94.90 wind 1.0 720 > th dose independent rect. 7 12
136 95.10 wind 9.0 720 < th dose independent rect. 22 21
141 95.24 precipitation 0.1 270 < th dose independent rect. 7 11
142 95.24 precipitation 0.1 270 < th dose dependent rect. 7 11
146 95.30 precipitation 0.1 720 < th dose independent rect. 10 6
147 95.30 precipitation 0.1 720 < th dose dependent rect. 10 6
167 95.37 temperature 25.0 90 < th dose independent rect. 23 12
169 95.41 temperature 10.0 720 > th dose independent rect. 10 6
170 95.41 atmosphere 1015.0 720 < th dose independent rect. 10 6
171 95.41 temperature 10.0 720 > th dose independent rect. 16 18
174 95.43 temperature 10.0 720 > th dose independent rect. 22 6
175 95.43 temperature 30.0 720 < th dose independent rect. 22 6
176 95.43 humidity 50.0 720 > th dose independent rect. 22 6
179 95.43 atmosphere 995.0 720 > th dose independent rect. 22 6
180 95.43 radiation 1.0 720 < th dose independent rect. 22 6
186 95.43 temperature 10.0 720 > th dose independent rect. 4 18
188 95.43 radiation 1.0 720 < th dose dependent rect. 22 6
199 95.51 wind 9.0 720 < th dose independent rect. 22 6
204 95.53 humidity 80.0 720 > th dose independent rect. 4 3
224 95.74 humidity 70.0 720 > th dose independent rect. 2 5
227 95.75 radiation 10.0 43200 < th dose dependent rect. 20 6
228 95.77 temperature 10.0 720 > th dose independent rect. 14 5
229 95.77 atmosphere 1015.0 720 < th dose independent rect. 14 5
230 95.77 atmosphere 1015.0 720 < th dose independent rect. 4 18
231 95.77 temperature 10.0 720 > th dose independent rect. 19 19
232 95.77 atmosphere 995.0 720 > th dose independent rect. 19 19
234 95.79 radiation 20.0 720 < th dose independent rect. 2 5
245 95.93 wind 9.0 720 < th dose independent rect. 10 21
249 95.98 temperature 20.0 270 > th dose independent rect. 3 19
251 96.00 atmosphere 995.0 270 > th dose independent rect. 7 11
252 96.01 wind 9.0 720 < th dose independent rect. 2 5
253 96.01 temperature 10.0 720 > th dose independent rect. 2 5
254 96.01 temperature 30.0 720 < th dose independent rect. 2 5
255 96.01 humidity 50.0 720 > th dose independent rect. 2 5
257 96.01 atmosphere 995.0 720 > th dose independent rect. 2 5
260 96.01 temperature 10.0 720 > th dose independent rect. 7 19
261 96.02 precipitation 0.1 720 < th dose independent rect. 10 21
262 96.02 precipitation 0.1 720 < th dose dependent rect. 10 21
263 96.04 atmosphere 995.0 10 > th dose dependent rect. 9 11
264 96.05 radiation 40.0 720 < th dose dependent rect. 4 3
265 96.06 atmosphere 995.0 720 > th dose dependent rect. 16 1
272 96.09 wind 1.0 720 > th dose independent rect. 14 5
278 96.10 temperature 10.0 90 > th dose dependent rect. 4 12
280 96.11 atmosphere 1015.0 720 < th dose dependent rect. 11 3
283 96.13 wind 9.0 720 < th dose independent rect. 1 9
285 96.17 temperature 25.0 10 < th dose dependent rect. 24 11
286 96.18 humidity 50.0 720 > th dose dependent rect. 4 3
292 96.22 radiation 1.0 30 < th dose independent rect. 22 23
295 96.26 wind 7.0 720 < th dose independent rect. 23 11
297 96.27 wind 1.0 720 > th dose independent rect. 19 3
298 96.27 temperature 20.0 720 > th dose independent rect. 10 21
300 96.30 temperature 10.0 720 > th dose independent rect. 1 9
301 96.30 atmosphere 995.0 720 > th dose independent rect. 1 9
302 96.30 temperature 10.0 720 > th dose independent rect. 10 15
304 96.31 precipitation 0.1 720 < th dose independent rect. 22 6
306 96.31 precipitation 0.1 720 < th dose dependent rect. 22 6
313 96.35 wind 9.0 720 < th dose independent rect. 14 5
320 96.38 radiation 1.0 30 < th dose dependent rect. 22 23
323 96.41 humidity 50.0 270 > th dose independent rect. 3 11
357 96.55 atmosphere 1015.0 270 < th dose dependent rect. 10 12
367 96.58 temperature 10.0 720 > th dose independent rect. 13 9
368 96.58 temperature 10.0 720 > th dose independent rect. 22 15
369 96.58 atmosphere 995.0 720 > th dose independent rect. 22 15
370 96.58 precipitation 0.1 720 < th dose independent rect. 4 18
372 96.58 precipitation 0.1 720 < th dose dependent rect. 4 18
374 96.59 wind 9.0 720 < th dose independent rect. 19 19
378 96.63 radiation 10.0 720 < th dose independent rect. 4 3
389 96.70 wind 9.0 720 < th dose independent rect. 16 18
419 96.74 temperature 10.0 720 > th dose independent rect. 23 11
420 96.74 atmosphere 995.0 720 > th dose independent rect. 23 11
421 96.74 temperature 10.0 720 > th dose independent rect. 10 13
426 96.76 wind 9.0 270 < th dose independent rect. 14 13
435 96.81 wind 9.0 720 < th dose independent rect. 22 13
449 96.87 temperature 10.0 720 > th dose independent rect. 4 9
450 96.87 atmosphere 995.0 720 > th dose independent rect. 4 9
451 96.87 atmosphere 1015.0 720 < th dose independent rect. 4 9
452 96.87 temperature 10.0 720 > th dose independent rect. 13 15
463 96.88 radiation 1.0 30 > th dose independent rect. 5 11
476 96.89 humidity 50.0 720 > th dose independent rect. 1 9
478 96.90 temperature 10.0 720 > th dose independent rect. 11 11
479 96.90 temperature 10.0 720 > th dose independent rect. 22 13
480 96.90 atmosphere 995.0 720 > th dose independent rect. 22 13
489 96.95 precipitation 0.1 720 < th dose independent rect. 2 5
491 96.95 precipitation 0.1 720 < th dose dependent rect. 2 5
500 96.98 radiation 40.0 720 < th dose independent rect. 16 3
505 96.99 atmosphere 1015.0 720 < th dose independent rect. 11 11
507 97.02 temperature 25.0 720 < th dose independent sin 12 NA
510 97.03 atmosphere 995.0 720 > th dose independent rect. 16 18
513 97.04 temperature 30.0 720 < th dose independent rect. 23 11
514 97.04 humidity 50.0 720 > th dose independent rect. 23 11
518 97.05 temperature 10.0 720 > th dose independent rect. 16 9
519 97.05 radiation 40.0 720 < th dose independent rect. 16 9
521 97.05 temperature 10.0 720 > th dose independent rect. 1 15
526 97.07 wind 9.0 720 < th dose independent rect. 16 3
532 97.07 atmosphere 1015.0 720 < th dose independent rect. 4 3
534 97.07 precipitation 0.1 270 < th dose independent rect. 3 11
538 97.07 precipitation 0.1 270 < th dose dependent rect. 3 11
540 97.08 temperature 25.0 720 < th dose independent rect. 14 14
553 97.11 temperature 10.0 30 > th dose dependent rect. 4 21
554 97.12 wind 7.0 90 < th dose independent rect. 16 12
614 97.31 precipitation 0.1 720 < th dose independent rect. 19 19
617 97.31 precipitation 0.1 720 < th dose dependent rect. 19 19
628 97.34 atmosphere 995.0 720 > th dose dependent rect. 16 3
637 97.40 wind 9.0 720 < th dose independent rect. 22 15
638 97.40 temperature 30.0 10 < th dose dependent sin 7 NA
641 97.41 atmosphere 1015.0 270 < th dose independent rect. 18 13
653 97.43 humidity 50.0 720 > th dose independent rect. 19 19
674 97.56 precipitation 0.1 720 < th dose independent rect. 4 3
676 97.56 precipitation 0.1 720 < th dose dependent rect. 4 3
682 97.58 precipitation 0.1 270 < th dose independent rect. 14 13
686 97.58 precipitation 0.1 270 < th dose dependent rect. 14 13
687 97.59 precipitation 0.1 720 < th dose independent rect. 23 11
688 97.59 precipitation 0.1 720 < th dose dependent rect. 23 11
711 97.65 wind 9.0 270 < th dose independent rect. 3 11
712 97.65 temperature 25.0 30 < th dose independent rect. 23 22
714 97.66 temperature 20.0 720 > th dose independent rect. 10 13
715 97.66 radiation 40.0 270 < th dose independent rect. 14 13
720 97.68 wind 9.0 720 < th dose independent rect. 16 10
730 97.70 temperature 20.0 720 > th dose independent rect. 4 1
733 97.70 temperature 30.0 720 < th dose dependent rect. 18 10
747 97.74 atmosphere 1010.0 90 < th dose independent rect. 20 13
756 97.77 humidity 70.0 90 > th dose independent rect. 20 13
762 97.78 precipitation 0.1 720 < th dose independent rect. 19 21
765 97.78 precipitation 0.1 720 < th dose dependent rect. 19 21
785 97.83 atmosphere 995.0 720 > th dose independent rect. 16 3
788 97.83 wind 1.0 270 > th dose independent rect. 14 13
793 97.86 temperature 25.0 10 > th dose independent sin 6 NA
811 97.91 humidity 80.0 720 > th dose independent rect. 4 1
818 97.92 atmosphere 995.0 90 > th dose dependent rect. 16 12
826 97.96 precipitation 0.1 720 < th dose independent rect. 10 13
828 97.96 radiation 10.0 720 < th dose dependent rect. 4 1
829 97.96 precipitation 0.1 720 < th dose dependent rect. 10 13
845 98.02 wind 1.0 720 > th dose independent rect. 16 1
850 98.03 radiation 1.0 90 < th dose dependent rect. 23 20
875 98.13 wind 9.0 90 < th dose independent rect. 9 11
883 98.16 atmosphere 1015.0 90 < th dose dependent rect. 4 20
886 98.17 atmosphere 995.0 270 > th dose independent rect. 14 13
890 98.18 wind 9.0 720 < th dose independent rect. 10 6
893 98.19 precipitation 0.1 720 < th dose independent rect. 11 11
894 98.19 wind 9.0 720 < th dose independent rect. 7 19
895 98.19 precipitation 0.1 720 < th dose dependent rect. 11 11
902 98.20 radiation 1.0 270 < th dose dependent rect. 3 20
905 98.21 precipitation 0.1 720 < th dose independent rect. 22 13
909 98.21 precipitation 0.1 720 < th dose dependent rect. 22 13
916 98.23 atmosphere 1015.0 720 < th dose independent rect. 10 13
919 98.23 temperature 20.0 10 > th dose dependent sin 7 NA
920 98.23 temperature 10.0 270 > th dose dependent rect. 2 21
922 98.24 temperature 25.0 90 < th dose independent rect. 23 6
946 98.28 humidity 50.0 720 > th dose independent rect. 22 13
976 98.35 temperature 25.0 30 > th dose independent rect. 19 21
995 98.41 atmosphere 1015.0 720 < th dose independent rect. 10 21
999 98.41 atmosphere 1015.0 10 < th dose dependent rect. 5 20