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Os12g0562600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0132) R2 : 0.528
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.748 (0.0338) R2dC : 0.51 R2C : 0.505
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.0278) R2dN8 : 0.0233 R2N8 : 0.0175
σ : 0.249
deviance : 28.36
__
_____
C
peak time of C : 7.95
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.76 0.224 11.7 0.232 0.715 -0.606 0.125 -0.386 0.103 7.55 0.0503 1511 -- --
22.82 0.222 11.7 0.2 0.722 -0.512 0.177 -- 0.101 7.59 0.04598 1516 -- --
22.81 0.222 11.7 0.234 0.716 -0.604 -- -0.398 0.104 7.55 0.05 1511 -- --
22.88 0.223 11.7 0.201 0.718 -0.513 -- -- 0.0971 7.58 0.05062 1516 -- --
44.21 0.311 11.7 0.333 -- -0.323 -- 0.0727 0.154 -- 0.2121 1508 -- --
25.22 0.235 11.7 0.339 0.745 -- 0.125 -- 0.154 7.98 -- -- -- --
25.27 0.235 11.7 0.343 0.745 -- -- -- 0.154 7.98 -- -- -- --
36.3 0.281 11.7 0.35 -- 0.914 -- -- 0.205 -- 4.76 2380 -- --
23.93 0.228 11.7 -- 0.724 -0.574 -- -- 0.0895 7.58 8.418e-05 1504 -- --
55.59 0.348 11.7 0.35 -- -- -- -- 0.164 -- -- -- -- --
28.36 0.249 11.7 -- 0.748 -- -- -- 0.116 7.95 -- -- -- --
39.74 0.294 11.7 -- -- 0.925 -- -- 0.231 -- 7.613 2370 -- --
58.82 0.358 11.7 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.67 radiation 30.0 90 < th dose independent rect. 4 19
2 21.75 radiation 30.0 10 < th dose independent rect. 5 18
5 21.87 radiation 40.0 10 < th dose dependent rect. 5 18
10 21.98 radiation 1.0 30 < th dose independent rect. 23 15
12 21.98 radiation 1.0 30 < th dose dependent rect. 23 15
14 22.00 radiation 30.0 270 < th dose independent rect. 2 8
22 22.03 humidity 70.0 30 > th dose dependent rect. 23 5
31 22.08 radiation 30.0 270 < th dose independent rect. 2 19
33 22.09 atmosphere 995.0 10 > th dose independent rect. 5 18
38 22.11 radiation 1.0 30 < th dose independent rect. 23 13
41 22.12 radiation 1.0 30 < th dose independent rect. 23 9
47 22.12 radiation 30.0 270 < th dose independent rect. 1 21
48 22.12 radiation 1.0 30 < th dose dependent rect. 23 13
53 22.13 radiation 1.0 30 < th dose dependent rect. 23 9
61 22.15 temperature 30.0 270 < th dose independent rect. 2 8
71 22.15 radiation 1.0 10 < th dose dependent rect. 23 7
72 22.16 humidity 80.0 10 > th dose independent rect. 23 6
85 22.20 radiation 1.0 10 < th dose independent rect. 23 7
97 22.24 atmosphere 1010.0 270 < th dose independent rect. 14 8
99 22.24 wind 7.0 10 < th dose independent rect. 5 18
112 22.29 radiation 30.0 90 < th dose independent rect. 15 8
119 22.30 wind 9.0 10 < th dose dependent rect. 5 7
120 22.30 wind 9.0 90 < th dose dependent rect. 4 8
121 22.31 wind 9.0 10 < th dose independent rect. 23 6
122 22.31 temperature 10.0 10 > th dose independent rect. 23 6
123 22.31 temperature 30.0 10 < th dose independent rect. 23 6
124 22.31 humidity 50.0 10 > th dose independent rect. 23 6
127 22.31 atmosphere 995.0 10 > th dose independent rect. 23 6
133 22.31 temperature 10.0 10 > th dose independent rect. 5 18
135 22.31 atmosphere 1015.0 10 < th dose independent rect. 5 18
155 22.35 temperature 15.0 270 > th dose independent rect. 14 8
158 22.35 precipitation 0.1 10 < th dose independent rect. 5 18
159 22.35 precipitation 0.1 10 < th dose dependent rect. 5 18
161 22.36 radiation 40.0 90 < th dose independent rect. 4 7
164 22.37 atmosphere 995.0 270 > th dose independent rect. 14 8
173 22.37 wind 9.0 10 < th dose dependent rect. 5 18
175 22.38 precipitation 0.1 270 < th dose independent rect. 2 8
178 22.38 precipitation 0.1 270 < th dose dependent rect. 2 8
186 22.40 radiation 30.0 270 < th dose independent rect. 14 20
194 22.41 wind 9.0 270 < th dose dependent rect. 2 8
196 22.42 radiation 20.0 270 < th dose independent rect. 15 18
199 22.42 radiation 40.0 270 < th dose dependent rect. 2 9
216 22.46 radiation 1.0 30 > th dose independent sin 9 NA
217 22.46 radiation 30.0 14400 < th dose independent rect. 17 7
218 22.46 wind 7.0 10 < th dose independent rect. 4 8
226 22.47 wind 7.0 270 < th dose independent rect. 2 8
241 22.48 radiation 40.0 270 < th dose dependent rect. 2 19
259 22.50 wind 1.0 270 > th dose independent rect. 14 8
260 22.50 temperature 15.0 270 > th dose independent rect. 2 8
268 22.50 humidity 70.0 270 > th dose dependent rect. 23 2
275 22.50 radiation 40.0 270 < th dose dependent rect. 3 16
278 22.51 atmosphere 1005.0 43200 > th dose independent rect. 9 1
303 22.54 atmosphere 1005.0 43200 < th dose independent rect. 9 1
315 22.55 radiation 20.0 10 < th dose independent rect. 15 8
317 22.55 temperature 10.0 270 > th dose independent rect. 22 16
318 22.55 atmosphere 995.0 270 > th dose independent rect. 22 16
328 22.56 precipitation 0.1 10 < th dose independent rect. 23 6
331 22.56 precipitation 0.1 10 < th dose dependent rect. 23 6
332 22.56 atmosphere 995.0 10 > th dose dependent rect. 16 7
334 22.56 wind 9.0 43200 > th dose dependent rect. 14 10
343 22.57 wind 9.0 270 < th dose independent rect. 22 16
347 22.57 radiation 1.0 30 < th dose dependent sin 9 NA
350 22.57 radiation 40.0 90 < th dose dependent rect. 15 8
356 22.58 temperature 30.0 90 < th dose independent rect. 4 7
361 22.58 wind 1.0 90 > th dose independent rect. 23 17
363 22.58 atmosphere 1010.0 43200 < th dose dependent rect. 4 1
365 22.58 radiation 40.0 10 < th dose dependent rect. 9 14
369 22.58 radiation 40.0 270 < th dose dependent rect. 1 21
373 22.59 atmosphere 995.0 270 > th dose independent rect. 2 8
374 22.59 atmosphere 1015.0 270 < th dose independent rect. 2 8
376 22.59 temperature 10.0 270 > th dose independent rect. 10 16
391 22.60 wind 1.0 30 > th dose independent rect. 23 6
394 22.60 wind 9.0 270 < th dose independent rect. 10 16
406 22.60 temperature 20.0 10 > th dose dependent rect. 16 20
407 22.61 radiation 1.0 30 < th dose independent sin 9 NA
412 22.61 wind 9.0 270 < th dose independent rect. 14 8
413 22.61 humidity 50.0 270 > th dose independent rect. 2 8
421 22.61 atmosphere 1010.0 43200 < th dose dependent rect. 8 1
434 22.62 humidity 50.0 270 > th dose independent rect. 22 16
441 22.62 temperature 30.0 10 < th dose dependent rect. 23 6
454 22.63 precipitation 0.1 270 < th dose independent rect. 14 8
462 22.63 temperature 15.0 270 > th dose independent rect. 1 22
463 22.63 atmosphere 1010.0 43200 < th dose dependent rect. 4 5
467 22.63 precipitation 0.1 270 < th dose dependent rect. 14 8
470 22.64 wind 7.0 43200 > th dose independent rect. 17 4
489 22.64 atmosphere 1000.0 10 > th dose independent rect. 16 7
498 22.64 temperature 15.0 270 > th dose independent rect. 2 19
518 22.64 temperature 10.0 10 > th dose dependent rect. 5 18
524 22.65 wind 1.0 43200 < th dose independent rect. 7 1
536 22.65 wind 7.0 43200 > th dose dependent rect. 17 4
546 22.65 radiation 30.0 10 < th dose dependent rect. 15 8
554 22.66 wind 9.0 43200 > th dose independent rect. 16 7
560 22.66 precipitation 0.1 270 < th dose independent rect. 10 16
580 22.66 precipitation 0.1 270 < th dose dependent rect. 10 16
585 22.67 wind 7.0 43200 < th dose independent rect. 17 4
629 22.68 wind 9.0 43200 < th dose independent rect. 14 9
630 22.68 wind 9.0 43200 > th dose independent rect. 14 10
662 22.69 wind 7.0 43200 > th dose independent rect. 19 1
664 22.69 wind 9.0 43200 < th dose independent rect. 14 7
669 22.69 wind 9.0 43200 < th dose independent rect. 14 11
681 22.69 radiation 30.0 14400 < th dose dependent rect. 24 5
682 22.69 wind 7.0 43200 > th dose dependent rect. 14 7
694 22.69 radiation 40.0 270 < th dose dependent rect. 14 19
744 22.70 atmosphere 995.0 270 > th dose independent rect. 2 19
748 22.70 atmosphere 1010.0 43200 < th dose dependent sin 7 NA
749 22.70 atmosphere 1010.0 43200 < th dose dependent sin 4 NA
792 22.71 radiation 10.0 4320 < th dose independent rect. 24 5
795 22.71 wind 5.0 90 < th dose independent rect. 4 7
797 22.71 temperature 20.0 10 > th dose independent rect. 5 7
848 22.72 temperature 15.0 90 > th dose independent rect. 4 7
863 22.72 wind 1.0 43200 < th dose dependent rect. 6 2
865 22.72 wind 3.0 10 < th dose dependent rect. 5 5
905 22.73 wind 1.0 43200 > th dose independent rect. 7 1
989 22.74 wind 9.0 43200 > th dose independent rect. 14 7