BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0562600 Os12g0562600|AK100149
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67890.1 | chr1:25457345-25462436 FORWARD LENGTH=766 75 8e-15
AT5G49470.2 | chr5:20063616-20068311 FORWARD LENGTH=832 74 2e-14
AT3G06640.1 | chr3:2074491-2078317 REVERSE LENGTH=731 73 3e-14
AT3G06620.1 | chr3:2062833-2067138 REVERSE LENGTH=774 72 7e-14
AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934 62 5e-11
AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031 58 8e-10
AT3G06630.1 | chr3:2070388-2073791 REVERSE LENGTH=672 58 9e-10
AT1G18160.1 | chr1:6249126-6253835 FORWARD LENGTH=993 55 6e-09
AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881 54 2e-08
AT4G23050.2 | chr4:12080112-12083708 FORWARD LENGTH=737 52 6e-08
>AT1G67890.1 | chr1:25457345-25462436 FORWARD LENGTH=766
Length = 765
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSFXXXXXXXXXXXXXYNVQTQM 60
VIGAVGFMN RLE+P + DPQW +L+ SCW ++ Q RPSF Y +Q Q
Sbjct: 692 VIGAVGFMNQRLEVPKDVDPQWIALMESCWHSEPQCRPSFQELMDKLRELQRKYTIQFQA 751
Query: 61 QRNASAAAKNSSIEE 75
R +A+ NSS++E
Sbjct: 752 AR--AASIDNSSLKE 764
>AT5G49470.2 | chr5:20063616-20068311 FORWARD LENGTH=832
Length = 831
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSFXXXXXXXXXXXXXYNVQTQM 60
VIGAVGFMN RLE+P DPQW SL+ SCW ++ Q RPSF Y +Q Q
Sbjct: 758 VIGAVGFMNQRLEVPKNVDPQWISLMESCWHSEPQDRPSFQEIMEKLRELQRKYTIQFQA 817
Query: 61 QRNASAAAKNSSIEE 75
R AS +NS+++E
Sbjct: 818 ARAAS--IENSALKE 830
>AT3G06640.1 | chr3:2074491-2078317 REVERSE LENGTH=731
Length = 730
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSFXXXXXXXXXXXXXYNVQTQM 60
VIGAVGFMN RLEIP + DP W SLI SCW D++LRP+F Y +Q Q
Sbjct: 652 VIGAVGFMNQRLEIPKDIDPDWISLIESCWHRDAKLRPTFQELMERLRDLQRKYTIQFQA 711
Query: 61 QR 62
R
Sbjct: 712 TR 713
>AT3G06620.1 | chr3:2062833-2067138 REVERSE LENGTH=774
Length = 773
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSFXXXXXXXXXXXXXYNVQTQM 60
VIGAVGFM+ RLEIP + DP+W SL+ SCW +D++LRP+F Y +Q Q
Sbjct: 700 VIGAVGFMDQRLEIPKDIDPRWISLMESCWHSDTKLRPTFQELMDKLRDLQRKYMIQFQA 759
Query: 61 QRNA 64
R A
Sbjct: 760 TRAA 763
>AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934
Length = 933
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSF 40
V+GAVGF N RLEIP E DP +IL CW+TD LRPSF
Sbjct: 875 VVGAVGFQNRRLEIPKELDPVVGRIILECWQTDPNLRPSF 914
>AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031
Length = 1030
Score = 58.2 bits (139), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSF 40
V+GAVGF + RL+IP DP LI CW+TDS+LRPSF
Sbjct: 954 VVGAVGFQHRRLDIPDFVDPAIADLISKCWQTDSKLRPSF 993
>AT3G06630.1 | chr3:2070388-2073791 REVERSE LENGTH=672
Length = 671
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCW 30
VIGAVGFMN RLEIP +TDP W SLI SCW
Sbjct: 640 VIGAVGFMNQRLEIPKDTDPDWISLIESCW 669
>AT1G18160.1 | chr1:6249126-6253835 FORWARD LENGTH=993
Length = 992
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSF 40
V+GAVGF + RL+IP DP +I CW+TD +LRPSF
Sbjct: 921 VVGAVGFQHRRLDIPEFVDPGIADIIRKCWQTDPRLRPSF 960
>AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881
Length = 880
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSF 40
V+GAVGF N RLEIP + D +I CW+T+ LRPSF
Sbjct: 815 VVGAVGFQNRRLEIPDDIDLTVAQIIRECWQTEPHLRPSF 854
>AT4G23050.2 | chr4:12080112-12083708 FORWARD LENGTH=737
Length = 736
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 1 VIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSF 40
V+G VGFM+ RL++P +P+ S+I CW+TD RPSF
Sbjct: 674 VVGVVGFMDRRLDLPEGLNPRIASIIQDCWQTDPAKRPSF 713
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.124 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,252,707
Number of extensions: 30530
Number of successful extensions: 86
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)