Os12g0562500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase-like protein (Fragment).
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Os12g0562500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.86 | 0.387 | 8.65 | 0.569 | 1.01 | -0.867 | -0.033 | 2.38 | 0.177 | 9.05 | 26.4 | 202 | -- | -- |
| 69.4 | 0.388 | 8.67 | 0.38 | 0.988 | -0.617 | 0.0306 | -- | 0.161 | 8.77 | 26.2 | 217 | -- | -- |
| 67.87 | 0.384 | 8.65 | 0.569 | 1.01 | -0.867 | -- | 2.39 | 0.177 | 9.05 | 26.4 | 202 | -- | -- |
| 69.07 | 0.387 | 8.68 | 0.332 | 1.01 | -0.631 | -- | -- | 0.135 | 8.96 | 26.2 | 202 | -- | -- |
| 107.94 | 0.484 | 8.65 | 0.785 | -- | -1.27 | -- | 2.24 | 0.34 | -- | 24.2 | 543 | -- | -- |
| 75.5 | 0.407 | 8.68 | 0.239 | 1.13 | -- | 0.0129 | -- | 0.112 | 8.18 | -- | -- | -- | -- |
| 75.5 | 0.407 | 8.68 | 0.239 | 1.13 | -- | -- | -- | 0.112 | 8.18 | -- | -- | -- | -- |
| 109.53 | 0.487 | 8.69 | 0.467 | -- | -1.13 | -- | -- | 0.239 | -- | 24.2 | 557 | -- | -- |
| 71.86 | 0.395 | 8.69 | -- | 1.03 | -0.56 | -- | -- | 0.0894 | 8.81 | 26.4 | 192 | -- | -- |
| 146.26 | 0.565 | 8.71 | 0.248 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 77.01 | 0.411 | 8.69 | -- | 1.13 | -- | -- | -- | 0.0849 | 8.17 | -- | -- | -- | -- |
| 114.99 | 0.499 | 8.7 | -- | -- | -1.05 | -- | -- | 0.177 | -- | 24.3 | 540 | -- | -- |
| 147.88 | 0.568 | 8.72 | -- | -- | -- | -- | -- | 0.0972 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.62 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 6 | 65.81 | temperature | 25.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 11 | 66.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 13 | 66.05 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 18 | 66.13 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 30 | 66.29 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 39 | 66.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 40 | 66.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 65 | 66.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 80 | 66.72 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 81 | 66.73 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 82 | 66.74 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 14 |
| 88 | 66.82 | humidity | 90.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 101 | 66.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 106 | 67.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 110 | 67.04 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 112 | 67.05 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 138 | 67.20 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 142 | 67.23 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 173 | 67.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 193 | 67.38 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 197 | 67.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 216 | 67.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 238 | 67.55 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 264 | 67.66 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 299 | 67.79 | temperature | 10.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 308 | 67.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 14 |
| 321 | 67.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 16 |
| 327 | 67.84 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 336 | 67.85 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 359 | 67.89 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 364 | 67.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 9 |
| 365 | 67.90 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 409 | 68.00 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 424 | 68.03 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 434 | 68.06 | temperature | 20.0 | 720 | > th | dose independent | sin | 7 | NA |
| 436 | 68.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 12 |
| 450 | 68.08 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 452 | 68.08 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 17 |
| 461 | 68.10 | humidity | 90.0 | 30 | < th | dose independent | rect. | 24 | 12 |
| 478 | 68.13 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 508 | 68.17 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 520 | 68.19 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 594 | 68.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 619 | 68.36 | temperature | 20.0 | 720 | < th | dose independent | sin | 8 | NA |
| 676 | 68.47 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 3 |
| 718 | 68.52 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 5 |
| 755 | 68.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 767 | 68.57 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 787 | 68.59 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 790 | 68.59 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 20 |
| 797 | 68.60 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 20 |
| 826 | 68.62 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 832 | 68.63 | temperature | 25.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 936 | 68.72 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 968 | 68.76 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 22 |
| 984 | 68.78 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 985 | 68.78 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 987 | 68.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 994 | 68.79 | temperature | 30.0 | 270 | < th | dose independent | sin | 3 | NA |