Os12g0561200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAPA-1-like conserved region domain containing protein.
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Os12g0561200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAPA-1-like conserved region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.55 | 0.202 | 10.2 | 0.397 | 0.446 | -0.482 | -0.141 | 0.414 | -0.0496 | 6.03 | 25.58 | 10 | -- | -- |
| 18.51 | 0.202 | 10.2 | 0.355 | 0.449 | -0.457 | -0.169 | -- | -0.0604 | 6.01 | 25.58 | 10 | -- | -- |
| 18.49 | 0.202 | 10.2 | 0.4 | 0.449 | -0.484 | -- | 0.476 | -0.048 | 5.99 | 25.58 | 10 | -- | -- |
| 18.57 | 0.202 | 10.2 | 0.352 | 0.452 | -0.443 | -- | -- | -0.0606 | 5.95 | 25.58 | 10 | -- | -- |
| 25.73 | 0.236 | 10.2 | 0.534 | -- | -0.755 | -- | 0.89 | 0.027 | -- | 24.3 | 154 | -- | -- |
| 21.46 | 0.217 | 10.2 | 0.287 | 0.573 | -- | 0.0663 | -- | -0.0853 | 5.15 | -- | -- | -- | -- |
| 21.47 | 0.217 | 10.2 | 0.287 | 0.573 | -- | -- | -- | -0.0856 | 5.16 | -- | -- | -- | -- |
| 26.07 | 0.238 | 10.2 | 0.422 | -- | -0.686 | -- | -- | 0.000844 | -- | 24.21 | 149 | -- | -- |
| 21.71 | 0.218 | 10.2 | -- | 0.479 | -0.355 | -- | -- | -0.103 | 5.73 | 25.58 | 10 | -- | -- |
| 38.68 | 0.291 | 10.2 | 0.307 | -- | -- | -- | -- | -0.0711 | -- | -- | -- | -- | -- |
| 23.65 | 0.227 | 10.2 | -- | 0.578 | -- | -- | -- | -0.118 | 5.14 | -- | -- | -- | -- |
| 30.5 | 0.257 | 10.2 | -- | -- | -0.626 | -- | -- | -0.0547 | -- | 24.3 | 151 | -- | -- |
| 41.18 | 0.3 | 10.2 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 2 | 17.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 13 | 17.60 | temperature | 25 | 10 | > th | dose dependent | sin | 3 | NA |
| 15 | 17.63 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 26 | 17.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 48 | 17.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 49 | 17.84 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 10 |
| 60 | 17.90 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 73 | 17.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 127 | 18.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 146 | 18.14 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 174 | 18.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 212 | 18.25 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 232 | 18.29 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 384 | 18.49 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 398 | 18.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 399 | 18.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 409 | 18.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 451 | 18.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 621 | 18.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 622 | 18.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 662 | 18.69 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 739 | 18.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 765 | 18.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 894 | 18.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |