BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0561200 Os12g0561200|AK063760
         (371 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56460.2  | chr1:21146765-21149468 FORWARD LENGTH=533          206   1e-53
AT2G47350.1  | chr2:19434588-19437045 FORWARD LENGTH=487          174   8e-44
AT3G06660.1  | chr3:2103060-2104776 FORWARD LENGTH=428            164   9e-41

>AT1G56460.2 | chr1:21146765-21149468 FORWARD LENGTH=533
          Length = 532

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 133/196 (67%), Gaps = 10/196 (5%)

Query: 178 RKQKAVTESPANVRSE-PLTTRRRALQSWMDGNSNSAIEFPDGLPPAPSRGKKDKLSDAE 236
           R ++   E  + V++E  +TTRRR+      G+S + IEFP GLPPAP R +K+   + +
Sbjct: 343 RTRRGAEEGQSEVKTEMTVTTRRRS------GHSGNLIEFPRGLPPAPPRKRKENGLEVD 396

Query: 237 MLAKKAEAAQRRKMQVEKATKESEAEAIRKILGLDSXXXXXXXXXXXXXX-XXXXXXXQT 295
              KKAEAAQRRK+QVEKA +ESEAEAIRKILG DS                       +
Sbjct: 397 QQLKKAEAAQRRKLQVEKAARESEAEAIRKILGQDSSRKKKEDKIKKRQEDKAKEKAADS 456

Query: 296 IPE--NTIRWVMGPKGTVVSFPEEVGLPSIFNSKPCNYPPPREKCAGPSCTNAYRYRDSK 353
           I    +T++WVMGP GT+V+FPEE+GLPSIFNS P +YPPPRE+CAGP CTN Y+YRDS+
Sbjct: 457 IARRSDTVKWVMGPSGTIVTFPEELGLPSIFNSTPHSYPPPRERCAGPECTNPYKYRDSE 516

Query: 354 LNLPLCSLKCYKAVNG 369
            NLPLCSL+CYKA+ G
Sbjct: 517 SNLPLCSLRCYKAIKG 532



>AT2G47350.1 | chr2:19434588-19437045 FORWARD LENGTH=487
          Length = 486

 Score =  174 bits (440), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 126/216 (58%), Gaps = 19/216 (8%)

Query: 157 STDADNSEEEPTSDSELDAQNRKQKAVTESPANVRSEPLTTRRRALQSWMDGNSNSAIEF 216
           S D D +EE  T+  E +  N           N R   +T+R+RAL S      +SAI+F
Sbjct: 281 SEDMDCAEEIETASDEKEIGN----------DNKRESTMTSRQRALAS----GRSSAIDF 326

Query: 217 PDGLPPAPSRGKKDKLSDAEMLAKKAEAAQRRKMQVEKATKESEAEAIRKILGLDSXXXX 276
            DGLPP  SR KK+ LS+ E   KKAEAAQRRK+Q+EKA +ESE  AI+KILG DS    
Sbjct: 327 SDGLPPT-SRRKKETLSEMEQQLKKAEAAQRRKVQIEKAARESEEGAIKKILGQDSSRKK 385

Query: 277 XXXXXXXXX---XXXXXXXXQTIPENTIRWVMGPKGTVVSFPEEVGLPSIFNSKPCNYPP 333
                               +      IR +MGP GT VSFP +  +PS+F+ KP  YPP
Sbjct: 386 RGDKIKKRLDDLAQEKAAQEERASTCCIRTIMGPNGTTVSFPID-KVPSLFDPKPSGYPP 444

Query: 334 PREKCAGPSCTNAYRYRDSKLNLPLCSLKCYKAVNG 369
           PRE C GPSCTN Y+YRDSK  +PLCSLKCYKAV G
Sbjct: 445 PRENCVGPSCTNPYKYRDSKTKVPLCSLKCYKAVQG 480



>AT3G06660.1 | chr3:2103060-2104776 FORWARD LENGTH=428
          Length = 427

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 115/178 (64%), Gaps = 6/178 (3%)

Query: 196 TTRRRALQSWMDGNS---NSAIEFPDGLPPAPSRGKKDKLSDAEMLAKKAEAAQRRKMQV 252
           TTR RALQS  D +S   +S++EFPDGLP   S+  K KLS+ E  +KKAEAAQRR+MQ 
Sbjct: 239 TTRTRALQSGKDPHSVIRSSSLEFPDGLPCPSSKRPKQKLSEVEQQSKKAEAAQRRRMQC 298

Query: 253 EKATKESEAEAIRKILGLDSXXXXXXXXXXXXX---XXXXXXXXQTIPENTIRWVMGPKG 309
           EKA +E+EAEAIRKILG DS                         T+  NTIR V+GP G
Sbjct: 299 EKAAQEAEAEAIRKILGQDSGRKKREEKIKKQQEERAQERAARSSTLASNTIRLVIGPSG 358

Query: 310 TVVSFPEEVGLPSIFNSKPCNYPPPREKCAGPSCTNAYRYRDSKLNLPLCSLKCYKAV 367
           T ++F E++GLP IF     +YPPPREKC GP+C  AY+YRDSK  LPLCSL CY A+
Sbjct: 359 TTMTFSEDIGLPDIFKPVTYSYPPPREKCVGPNCEKAYKYRDSKSKLPLCSLGCYNAI 416



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.125    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,746,356
Number of extensions: 314059
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1797
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 112 (47.8 bits)