Os12g0561000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c).
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Os12g0561000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.06 | 0.188 | 12.6 | -0.379 | 0.254 | -0.213 | 0.0511 | 0.534 | -0.0556 | 2.83 | 21.22 | 1361 | -- | -- |
| 16.5 | 0.189 | 12.6 | -0.472 | 0.235 | -0.188 | 0.154 | -- | -0.0939 | 3.08 | 27.36 | 1418 | -- | -- |
| 16.06 | 0.187 | 12.6 | -0.38 | 0.254 | -0.213 | -- | 0.534 | -0.0556 | 2.82 | 21.24 | 1361 | -- | -- |
| 16.17 | 0.187 | 12.6 | -0.486 | 0.224 | -0.219 | -- | -- | -0.0979 | 3.1 | 47.56 | 1374 | -- | -- |
| 18.39 | 0.2 | 12.6 | -0.448 | -- | -0.243 | -- | 0.487 | -0.0886 | -- | 22.1 | 1882 | -- | -- |
| 17.91 | 0.198 | 12.7 | -0.52 | 0.23 | -- | 0.0656 | -- | -0.144 | 3.09 | -- | -- | -- | -- |
| 17.92 | 0.198 | 12.7 | -0.521 | 0.231 | -- | -- | -- | -0.145 | 3.14 | -- | -- | -- | -- |
| 18.38 | 0.2 | 12.6 | -0.524 | -- | -0.29 | -- | -- | -0.106 | -- | 46.87 | 506 | -- | -- |
| 22.79 | 0.222 | 12.6 | -- | 0.229 | -0.199 | -- | -- | -0.0578 | 2.73 | 50.09 | 1193 | -- | -- |
| 20.95 | 0.214 | 12.7 | -0.511 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 25.08 | 0.234 | 12.6 | -- | 0.22 | -- | -- | -- | -0.0866 | 3.14 | -- | -- | -- | -- |
| 24.84 | 0.232 | 12.6 | -- | -- | -0.284 | -- | -- | -0.0547 | -- | 43.15 | 533 | -- | -- |
| 27.85 | 0.246 | 12.6 | -- | -- | -- | -- | -- | -0.0819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 3 | 15.19 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 7 | 15.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 12 | 15.30 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 39 | 15.48 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 46 | 15.53 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 50 | 15.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 55 | 15.56 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 57 | 15.57 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 69 | 15.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 83 | 15.69 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 93 | 15.75 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 105 | 15.79 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 115 | 15.82 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 116 | 15.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 123 | 15.83 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 148 | 15.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 150 | 15.85 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 152 | 15.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 154 | 15.86 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 161 | 15.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 166 | 15.88 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 171 | 15.89 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 199 | 15.92 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 209 | 15.93 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 210 | 15.93 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 227 | 15.93 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 231 | 15.94 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 236 | 15.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 291 | 15.96 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 305 | 15.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 316 | 15.97 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 322 | 15.97 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 323 | 15.97 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 362 | 15.98 | radiation | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 363 | 15.98 | radiation | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 366 | 15.98 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 369 | 15.98 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 370 | 15.98 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 8 |
| 386 | 15.98 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 9 | NA |
| 390 | 15.98 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 391 | 15.98 | humidity | 60 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 401 | 15.98 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 442 | 15.99 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 15 |
| 445 | 15.99 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 446 | 15.99 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 7 | NA |
| 465 | 15.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 500 | 16.00 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 503 | 16.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 510 | 16.00 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 517 | 16.00 | wind | 1 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 570 | 16.01 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 701 | 16.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 702 | 16.02 | wind | 1 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 703 | 16.02 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 704 | 16.02 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 725 | 16.02 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 786 | 16.02 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 21 |
| 824 | 16.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 825 | 16.03 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 843 | 16.03 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 861 | 16.03 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 2 | NA |
| 863 | 16.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 865 | 16.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 868 | 16.03 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 869 | 16.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 887 | 16.03 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 912 | 16.03 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 19 |
| 929 | 16.04 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 930 | 16.04 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 950 | 16.04 | radiation | 20 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 961 | 16.04 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 979 | 16.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 984 | 16.04 | radiation | 20 | 43200 | < th | dose dependent | rect. | 19 | 10 |