BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0561000 Os12g0561000|AB027123
         (63 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61310.1  | chr5:24653543-24653737 REVERSE LENGTH=65           110   1e-25
AT5G40382.1  | chr5:16155486-16155683 REVERSE LENGTH=66            94   2e-20
AT2G47380.1  | chr2:19441694-19441888 FORWARD LENGTH=65            90   2e-19

>AT5G61310.1 | chr5:24653543-24653737 REVERSE LENGTH=65
          Length = 64

 Score =  110 bits (275), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 57/63 (90%)

Query: 1  MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVV 60
          MAG +IAHATLKGPSVVKE+ IGLTLGL AGGLWKMHHWNEQRKTR FYD+LE+G+I VV
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 61 VEE 63
          V E
Sbjct: 61 VTE 63



>AT5G40382.1 | chr5:16155486-16155683 REVERSE LENGTH=66
          Length = 65

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 5  RIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63
          +I  A  KGPSVVKEI  G+TLG   GGLWKMHHWN QR+T+ FYD+LEKG+ISVVVE+
Sbjct: 6  KIGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVED 64



>AT2G47380.1 | chr2:19441694-19441888 FORWARD LENGTH=65
          Length = 64

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 57/63 (90%)

Query: 1  MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVV 60
          MAG ++AHATLKGPSVVKE+ IGL LGL AGGLWKMHHWNEQRKTR+FYD+LE+G+ISVV
Sbjct: 1  MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 61 VEE 63
            E
Sbjct: 61 AAE 63



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,421,209
Number of extensions: 44369
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 63
Length of database: 11,106,569
Length adjustment: 36
Effective length of query: 27
Effective length of database: 10,119,593
Effective search space: 273229011
Effective search space used: 273229011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)