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Os12g0560400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.019) R2 : 0.635
β1 : -1.77 (0.0697) R2dD : 0.536 R2D : 0.503
β2 : 0.621 (0.0497) R2dC : 0.126 R2C : 0.113
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0406) R2dN8 : 0.00893 R2N8 : -0.0182
σ : 0.358
deviance : 58.37
__
_____
C
peak time of C : 5.66
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.92 0.308 11.6 -1.33 0.669 -0.732 0.83 0.859 0.0287 4.73 24.7 1274 -- --
43.21 0.306 11.6 -1.55 0.671 -0.646 0.92 -- -0.0399 4.64 24.87 1250 -- --
44.3 0.31 11.6 -1.44 0.634 -0.641 -- 0.52 -0.00712 5.24 24.73 1454 -- --
44.41 0.31 11.6 -1.56 0.635 -0.579 -- -- -0.0581 5.48 25.19 1515 -- --
48.37 0.324 11.6 -1.31 -- -1.13 -- 1.42 0.118 -- 23.31 390 -- --
57.84 0.357 11.6 -1.77 0.614 -- 0.53 -- -0.115 5.34 -- -- -- --
58.37 0.358 11.6 -1.77 0.621 -- -- -- -0.117 5.66 -- -- -- --
48.29 0.324 11.6 -1.56 -- -1.03 -- -- 0.0312 -- 23.27 360 -- --
57.86 0.354 11.5 -- 0.632 -1.44 -- -- 0.526 5.49 13.95 47520 -- --
78.4 0.414 11.6 -1.75 -- -- -- -- -0.102 -- -- -- -- --
140.86 0.555 11.6 -- 0.593 -- -- -- 0.0799 5.8 -- -- -- --
78.63 0.413 11.5 -- -- -1.42 -- -- 0.531 -- 13.8 47520 -- --
159.12 0.589 11.6 -- -- -- -- -- 0.0918 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.71 temperature 10.0 270 > th dose dependent rect. 1 16
4 37.88 temperature 10.0 270 > th dose dependent rect. 23 19
24 39.48 temperature 10.0 10 > th dose dependent rect. 2 18
32 39.71 temperature 30.0 270 < th dose independent rect. 17 21
48 40.31 humidity 70.0 720 > th dose independent rect. 17 18
49 40.36 humidity 70.0 720 > th dose independent sin 11 NA
57 40.53 temperature 15.0 270 > th dose dependent rect. 11 7
58 40.54 temperature 10.0 270 > th dose dependent rect. 13 4
63 40.66 humidity 70.0 720 > th dose independent rect. 17 5
131 41.55 precipitation 0.1 270 < th dose independent rect. 13 15
132 41.55 precipitation 0.1 270 < th dose dependent rect. 13 15
133 41.56 temperature 10.0 10 > th dose dependent rect. 24 20
144 41.65 humidity 70.0 720 > th dose independent rect. 17 14
154 41.71 radiation 1.0 270 > th dose independent rect. 13 5
180 41.83 radiation 1.0 270 > th dose independent sin 18 NA
184 41.84 precipitation 0.1 270 < th dose independent rect. 13 4
187 41.84 precipitation 0.1 270 < th dose dependent rect. 13 4
195 41.90 wind 7.0 270 < th dose independent rect. 13 4
199 41.93 wind 1.0 270 > th dose independent rect. 13 4
207 41.99 wind 1.0 270 > th dose independent rect. 4 9
211 42.01 atmosphere 995.0 270 > th dose independent rect. 17 20
225 42.10 temperature 10.0 270 > th dose independent rect. 13 4
227 42.10 atmosphere 1010.0 270 < th dose independent rect. 13 4
229 42.10 temperature 10.0 270 > th dose independent rect. 17 20
231 42.11 radiation 1.0 270 < th dose dependent sin 18 NA
239 42.14 humidity 50.0 270 > th dose dependent rect. 17 6
240 42.15 radiation 1.0 270 < th dose independent sin 17 NA
261 42.23 temperature 10.0 10 > th dose dependent rect. 14 6
266 42.26 radiation 10.0 270 < th dose dependent sin 16 NA
269 42.28 wind 1.0 270 > th dose independent rect. 13 15
279 42.31 temperature 30.0 270 < th dose independent rect. 5 9
309 42.41 wind 9.0 270 < th dose independent rect. 17 20
332 42.52 humidity 90.0 270 < th dose independent rect. 13 4
345 42.61 temperature 10.0 270 > th dose dependent rect. 13 15
347 42.62 humidity 90.0 270 < th dose dependent rect. 13 4
372 42.71 radiation 1.0 270 < th dose independent rect. 5 20
385 42.75 radiation 40.0 270 < th dose independent rect. 18 20
391 42.76 radiation 1.0 270 < th dose independent rect. 4 22
394 42.79 temperature 25.0 1440 > th dose dependent rect. 21 19
396 42.80 temperature 15.0 10 > th dose independent rect. 20 18
407 42.85 atmosphere 1015.0 270 < th dose independent rect. 18 19
408 42.85 humidity 90.0 270 < th dose dependent rect. 12 6
425 42.90 temperature 25.0 270 > th dose independent rect. 13 5
427 42.90 temperature 25.0 270 > th dose independent rect. 11 7
431 42.90 temperature 25.0 1440 > th dose dependent rect. 6 10
449 42.93 precipitation 0.1 270 < th dose independent rect. 1 16
451 42.93 precipitation 0.1 270 < th dose dependent rect. 1 16
454 42.94 radiation 1.0 270 > th dose independent rect. 11 19
457 42.94 temperature 25.0 1440 > th dose dependent rect. 13 22
459 42.94 radiation 1.0 270 < th dose dependent rect. 4 22
488 42.99 temperature 25.0 1440 > th dose dependent sin 2 NA
494 43.00 temperature 25.0 14400 > th dose independent rect. 10 1
511 43.02 temperature 20.0 270 > th dose dependent sin 22 NA
516 43.02 temperature 25.0 1440 > th dose dependent rect. 6 19
548 43.04 temperature 25.0 1440 > th dose dependent no NA NA
582 43.07 precipitation 0.1 30 < th dose independent rect. 14 6
585 43.07 precipitation 0.1 30 < th dose dependent rect. 14 6
607 43.09 precipitation 0.1 270 < th dose independent rect. 23 19
612 43.09 precipitation 0.1 270 < th dose dependent rect. 23 19
617 43.10 humidity 90.0 14400 < th dose independent rect. 18 1
634 43.11 temperature 25.0 14400 < th dose independent rect. 10 1
635 43.11 atmosphere 995.0 270 > th dose independent rect. 13 4
650 43.12 temperature 25.0 14400 < th dose independent rect. 12 1
679 43.14 radiation 1.0 270 < th dose dependent rect. 5 18
691 43.16 wind 1.0 10 > th dose independent rect. 14 6
712 43.19 temperature 30.0 720 < th dose independent rect. 17 5
726 43.21 temperature 25.0 14400 > th dose independent rect. 10 4
727 43.21 temperature 25.0 14400 < th dose independent rect. 10 4
728 43.21 wind 9.0 270 < th dose independent rect. 13 16
757 43.24 temperature 25.0 14400 < th dose dependent rect. 17 2
770 43.25 wind 9.0 10 < th dose independent rect. 14 6
771 43.25 temperature 10.0 10 > th dose independent rect. 14 6
773 43.25 atmosphere 1010.0 10 < th dose independent rect. 14 6
777 43.25 atmosphere 995.0 10 > th dose independent rect. 20 18
782 43.26 humidity 50.0 270 > th dose independent rect. 5 8
813 43.30 temperature 25.0 14400 > th dose independent rect. 12 2
824 43.31 temperature 25.0 14400 < th dose dependent rect. 14 6
835 43.32 temperature 25.0 1440 > th dose dependent rect. 13 1
853 43.34 temperature 10.0 270 > th dose independent rect. 4 9
854 43.34 atmosphere 995.0 270 > th dose independent rect. 4 9
855 43.34 atmosphere 1015.0 270 < th dose independent rect. 4 9
856 43.34 temperature 10.0 270 > th dose independent rect. 13 15
857 43.34 radiation 1.0 270 < th dose independent rect. 7 16
860 43.34 radiation 10.0 270 < th dose dependent rect. 17 8
898 43.38 wind 7.0 270 < th dose independent rect. 23 19
915 43.40 atmosphere 1015.0 10 < th dose independent rect. 20 18
935 43.42 radiation 1.0 270 > th dose dependent rect. 14 4
971 43.44 precipitation 0.1 270 < th dose independent rect. 5 8
977 43.44 precipitation 0.1 270 < th dose dependent rect. 5 8
979 43.44 temperature 25.0 720 > th dose dependent rect. 20 13
987 43.45 temperature 30.0 270 < th dose independent rect. 17 8
990 43.46 radiation 40.0 10 < th dose independent rect. 14 6
993 43.46 temperature 15.0 270 > th dose independent rect. 17 8
995 43.46 wind 7.0 270 < th dose independent rect. 1 16
998 43.46 atmosphere 1015.0 270 < th dose dependent rect. 13 4