BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0560400 Os12g0560400|AK062352
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16265.1  | chr4:9202529-9203975 REVERSE LENGTH=115            194   7e-51
AT3G16980.1  | chr3:5794526-5795699 FORWARD LENGTH=115            194   9e-51

>AT4G16265.1 | chr4:9202529-9203975 REVERSE LENGTH=115
          Length = 114

 Score =  194 bits (494), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 93/104 (89%)

Query: 1   NNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPR 60
           NNILYPKED++Q ILLYACRNCDHQE ADNNCVYRN VHHS  E TQ+L DVA DPTLPR
Sbjct: 11  NNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPR 70

Query: 61  TKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 104
           TKAVRCA C HGEAVFFQATARGEEGMTLFFVCCNP+C HRWRE
Sbjct: 71  TKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114



>AT3G16980.1 | chr3:5794526-5795699 FORWARD LENGTH=115
          Length = 114

 Score =  194 bits (492), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 95/104 (91%)

Query: 1   NNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPR 60
           NNILYPKED++QKILLYACRNCDHQEVADN+CVYRN VHHS  E TQ+L DVA DPTLPR
Sbjct: 11  NNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPR 70

Query: 61  TKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 104
           TKAVRC+ C H EAVFFQATARGEEGMTLFFVCCNP+CGHRWRE
Sbjct: 71  TKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,437,971
Number of extensions: 83829
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)