Os12g0558400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FBD domain containing protein.
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Os12g0558400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FBD domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.58 | 0.288 | 3.11 | 0.223 | 0.18 | -0.193 | -0.0592 | -0.879 | 0.0181 | 7.08 | 67.88 | 5877 | -- | -- |
| 38.58 | 0.289 | 3.11 | 0.116 | 0.178 | -0.231 | -0.0795 | -- | -0.0223 | 6.97 | 72.98 | 7235 | -- | -- |
| 37.59 | 0.286 | 3.11 | 0.225 | 0.18 | -0.193 | -- | -0.879 | 0.018 | 7.14 | 68.35 | 5875 | -- | -- |
| 38.6 | 0.289 | 3.11 | 0.116 | 0.179 | -0.233 | -- | -- | -0.0223 | 7.16 | 73 | 7232 | -- | -- |
| 39.26 | 0.292 | 3.12 | 0.227 | -- | -0.202 | -- | -0.858 | 0.0162 | -- | 68 | 5766 | -- | -- |
| 39.57 | 0.295 | 3.09 | 0.0809 | 0.178 | -- | -0.0737 | -- | 0.0634 | 7.06 | -- | -- | -- | -- |
| 39.58 | 0.295 | 3.09 | 0.0796 | 0.178 | -- | -- | -- | 0.0636 | 7.15 | -- | -- | -- | -- |
| 40.26 | 0.296 | 3.11 | 0.118 | -- | -0.235 | -- | -- | -0.0155 | -- | 70 | 7136 | -- | -- |
| 38.94 | 0.291 | 3.11 | -- | 0.179 | -0.204 | -- | -- | -0.0226 | 7.13 | 72 | 7233 | -- | -- |
| 41.25 | 0.3 | 3.09 | 0.0829 | -- | -- | -- | -- | 0.0668 | -- | -- | -- | -- | -- |
| 39.75 | 0.295 | 3.09 | -- | 0.179 | -- | -- | -- | 0.0548 | 7.12 | -- | -- | -- | -- |
| 40.62 | 0.297 | 3.11 | -- | -- | -0.208 | -- | -- | -0.0201 | -- | 70 | 7137 | -- | -- |
| 41.44 | 0.3 | 3.1 | -- | -- | -- | -- | -- | 0.0576 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.19 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 1 |
| 4 | 35.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 35.91 | wind | 1 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 7 | 35.98 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 13 | 37.20 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 6 |
| 15 | 37.30 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 1 |
| 16 | 37.41 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 17 | 37.42 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 14 |
| 21 | 37.48 | humidity | 80 | 14400 | < th | dose dependent | rect. | 2 | 7 |
| 24 | 37.50 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 28 | 37.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 30 | 37.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 32 | 37.55 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 33 | 37.55 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 43 | 37.56 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 8 |
| 45 | 37.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 51 | 37.57 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 10 |
| 55 | 37.58 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 20 |
| 57 | 37.59 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 61 | 37.62 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 78 | 37.65 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 94 | 37.73 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 6 |
| 110 | 37.78 | humidity | 80 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 113 | 37.79 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 114 | 37.79 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 134 | 37.84 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 3 |
| 170 | 37.89 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 3 |
| 177 | 37.89 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 221 | 37.91 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 4 | 23 |
| 222 | 37.91 | humidity | 50 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 229 | 37.91 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 8 | 11 |
| 232 | 37.91 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 233 | 37.92 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 235 | 37.92 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 7 | 23 |
| 240 | 37.93 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 5 |
| 241 | 37.93 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 245 | 37.93 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 264 | 37.94 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 285 | 37.95 | humidity | 70 | 4320 | > th | dose independent | sin | 0 | NA |
| 289 | 37.95 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 290 | 37.95 | humidity | 90 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 293 | 37.95 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 328 | 37.96 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 350 | 37.97 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 359 | 37.97 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 11 |
| 393 | 37.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 395 | 37.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 406 | 37.98 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 22 |
| 426 | 37.98 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 430 | 37.99 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 434 | 37.99 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 435 | 37.99 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 6 |
| 458 | 37.99 | humidity | 60 | 4320 | > th | dose dependent | sin | 3 | NA |
| 461 | 37.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 521 | 38.01 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 525 | 38.01 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 612 | 38.01 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 621 | 38.01 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 2 |
| 659 | 38.02 | humidity | 70 | 4320 | < th | dose independent | sin | 0 | NA |
| 694 | 38.02 | humidity | 70 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 696 | 38.02 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 752 | 38.03 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 18 |
| 818 | 38.04 | humidity | 60 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 819 | 38.04 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 843 | 38.05 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 856 | 38.05 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 15 |
| 862 | 38.05 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 20 |
| 955 | 38.06 | humidity | 90 | 4320 | < th | dose dependent | rect. | 5 | 11 |
| 969 | 38.07 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 970 | 38.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |