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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0557900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0328) R2 : 0.302
β1 : -1.45 (0.12) R2dD : 0.233 R2D : 0.189
β2 : 0.536 (0.0852) R2dC : 0.0608 R2C : 0.0571
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.337 (0.0701) R2dN8 : 0.0474 R2N8 : 0.00389
σ : 0.617
deviance : 173.63
__
_____
C
peak time of C : 17.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
156.52 0.588 4 -1.79 0.222 1.05 -0.617 -1.41 -0.46 19 24.93 84 -- --
156.95 0.583 3.99 -1.63 0.229 0.914 -0.741 -- -0.448 18.6 23.8 95 -- --
157.25 0.584 4.01 -1.83 0.217 1.11 -- -1.81 -0.49 20.1 24.87 84 -- --
158.1 0.586 3.99 -1.64 0.232 0.962 -- -- -0.469 20.1 23.6 84 -- --
159.51 0.588 4.01 -1.84 -- 1.16 -- -1.59 -0.506 -- 24.3 109 -- --
172.89 0.616 3.96 -1.45 0.539 -- -0.539 -- -0.334 17.1 -- -- -- --
173.63 0.617 3.96 -1.45 0.536 -- -- -- -0.337 17.1 -- -- -- --
160.47 0.59 3.98 -1.65 -- 1.04 -- -- -0.467 -- 23.81 113 -- --
224.31 0.701 3.94 -- 0.395 0.561 -- -- -0.215 18.1 24.83 95 -- --
188.69 0.642 3.96 -1.47 -- -- -- -- -0.35 -- -- -- -- --
229.36 0.708 3.93 -- 0.561 -- -- -- -0.175 17 -- -- -- --
229.09 0.705 3.93 -- -- 0.8 -- -- -0.229 -- 24.9 113 -- --
245.95 0.732 3.92 -- -- -- -- -- -0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.50 humidity 70 1440 > th dose independent rect. 17 2
3 151.15 temperature 30 270 < th dose independent rect. 3 15
6 151.73 humidity 70 1440 < th dose independent rect. 17 2
8 151.94 radiation 1 43200 < th dose dependent rect. 24 4
10 152.21 radiation 10 1440 < th dose dependent rect. 16 2
11 152.22 radiation 10 1440 < th dose dependent rect. 16 8
13 152.24 radiation 10 1440 < th dose dependent rect. 16 6
18 152.35 humidity 70 1440 > th dose independent rect. 17 17
20 152.37 radiation 10 1440 < th dose dependent rect. 16 10
21 152.39 radiation 1 43200 < th dose dependent rect. 24 1
26 152.60 humidity 70 1440 > th dose independent rect. 17 5
27 152.60 humidity 70 1440 > th dose independent rect. 17 7
36 152.68 humidity 70 1440 > th dose independent rect. 17 13
41 152.98 temperature 30 90 < th dose independent rect. 15 17
47 153.42 humidity 70 1440 > th dose independent sin 12 NA
48 153.44 radiation 1 43200 < th dose dependent rect. 22 6
49 153.50 radiation 1 270 > th dose independent rect. 17 22
63 153.71 radiation 40 1440 < th dose dependent rect. 17 7
64 153.72 radiation 10 1440 > th dose independent rect. 16 1
76 153.77 radiation 40 1440 < th dose dependent rect. 17 5
83 153.82 humidity 70 1440 < th dose independent rect. 16 19
98 153.94 temperature 30 270 < th dose independent rect. 11 9
105 154.06 radiation 10 1440 > th dose independent sin 13 NA
128 154.13 radiation 40 1440 < th dose dependent rect. 17 1
134 154.18 radiation 10 1440 < th dose dependent sin 15 NA
136 154.19 radiation 1 43200 < th dose dependent rect. 22 3
150 154.26 radiation 10 1440 > th dose independent rect. 14 17
181 154.48 temperature 25 270 > th dose dependent sin 10 NA
185 154.51 humidity 70 1440 < th dose independent sin 12 NA
187 154.53 radiation 1 1440 < th dose independent rect. 16 14
209 154.61 wind 7 43200 > th dose dependent rect. 17 4
211 154.62 wind 7 43200 > th dose independent rect. 17 4
220 154.66 radiation 1 1440 < th dose independent rect. 17 1
231 154.73 radiation 1 1440 < th dose independent rect. 17 7
236 154.75 radiation 1 1440 < th dose independent rect. 17 5
248 154.79 wind 7 43200 < th dose independent rect. 17 4
251 154.80 radiation 1 1440 < th dose independent sin 14 NA
278 154.89 radiation 10 1440 > th dose independent rect. 14 4
284 154.89 radiation 1 1440 < th dose independent rect. 17 9
312 154.93 humidity 90 1440 < th dose dependent rect. 18 1
315 154.95 radiation 10 1440 > th dose independent rect. 16 14
341 155.01 radiation 30 1440 > th dose independent rect. 15 17
386 155.13 wind 7 43200 > th dose independent rect. 19 2
389 155.13 temperature 30 90 < th dose dependent rect. 3 18
390 155.14 wind 7 43200 < th dose independent rect. 19 2
394 155.15 humidity 60 1440 > th dose dependent rect. 18 1
447 155.27 radiation 1 1440 > th dose dependent rect. 16 2
463 155.33 temperature 30 270 < th dose independent rect. 11 21
467 155.35 temperature 25 90 > th dose dependent rect. 17 23
504 155.57 radiation 1 270 < th dose independent rect. 3 15
508 155.60 radiation 30 1440 > th dose independent rect. 15 1
534 155.65 temperature 25 720 > th dose dependent rect. 20 15
561 155.72 temperature 30 270 < th dose independent rect. 24 21
568 155.75 humidity 80 1440 < th dose dependent rect. 8 12
649 155.96 radiation 1 270 > th dose independent sin 2 NA
677 156.01 radiation 1 270 < th dose independent sin 2 NA
702 156.05 atmosphere 1000 30 > th dose independent rect. 15 17
704 156.05 temperature 25 90 > th dose dependent rect. 8 20
711 156.06 radiation 30 1440 < th dose independent rect. 15 17
727 156.09 atmosphere 995 720 < th dose independent rect. 16 1
730 156.09 atmosphere 995 720 < th dose dependent rect. 16 1
731 156.09 temperature 25 90 > th dose dependent rect. 12 23
734 156.10 wind 7 43200 > th dose independent rect. 15 7
783 156.17 temperature 15 90 > th dose dependent rect. 8 20
813 156.25 radiation 1 270 < th dose dependent rect. 3 16
816 156.26 wind 7 43200 < th dose independent rect. 15 7
861 156.32 temperature 30 90 < th dose dependent rect. 24 23
867 156.35 humidity 70 1440 > th dose independent rect. 8 13
922 156.37 humidity 70 1440 > th dose independent rect. 8 22
931 156.38 humidity 80 1440 < th dose dependent rect. 15 22
941 156.39 humidity 80 1440 < th dose dependent rect. 17 20
942 156.40 radiation 1 270 < th dose independent rect. 3 12
953 156.41 humidity 80 1440 < th dose dependent rect. 15 20
980 156.45 humidity 50 1440 > th dose dependent rect. 8 13
996 156.48 humidity 80 1440 < th dose dependent sin 21 NA
997 156.48 temperature 10 270 > th dose dependent rect. 6 21
998 156.48 humidity 80 1440 < th dose dependent rect. 17 22