Os12g0556500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os12g0556500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.14 | 0.7 | 10 | 0.682 | 0.979 | 0.156 | 0.265 | -14.5 | 0.596 | 2.36 | 30.74 | 1602 | -- | -- |
| 223.3 | 0.696 | 9.69 | 2.64 | 1.2 | -1.49 | -0.109 | -- | 0.98 | 2.12 | 25.33 | 1151 | -- | -- |
| 222.07 | 0.694 | 10 | 0.722 | 0.95 | 0.166 | -- | -15.1 | 0.593 | 2.14 | 31.1 | 1843 | -- | -- |
| 221.07 | 0.692 | 9.69 | 2.85 | 1.17 | -1.65 | -- | -- | 0.967 | 1.49 | 25.33 | 1061 | -- | -- |
| 274.76 | 0.772 | 9.97 | 0.891 | -- | 0.0604 | -- | -13.8 | 0.621 | -- | 30.18 | 1825 | -- | -- |
| 301.34 | 0.814 | 9.71 | 2.39 | 0.869 | -- | 0.0465 | -- | 0.836 | 2.39 | -- | -- | -- | -- |
| 301.35 | 0.813 | 9.71 | 2.39 | 0.869 | -- | -- | -- | 0.836 | 2.39 | -- | -- | -- | -- |
| 269.2 | 0.764 | 9.68 | 2.89 | -- | -1.53 | -- | -- | 0.984 | -- | 25.6 | 1768 | -- | -- |
| 416.24 | 0.95 | 9.8 | -- | 1.08 | -0.897 | -- | -- | 0.454 | 2.08 | 28.67 | 1129 | -- | -- |
| 346.03 | 0.869 | 9.71 | 2.43 | -- | -- | -- | -- | 0.857 | -- | -- | -- | -- | -- |
| 452.23 | 0.995 | 9.77 | -- | 0.916 | -- | -- | -- | 0.569 | 2.44 | -- | -- | -- | -- |
| 466.38 | 1.01 | 9.76 | -- | -- | -1.23 | -- | -- | 0.624 | -- | 25.6 | 1768 | -- | -- |
| 501.72 | 1.05 | 9.77 | -- | -- | -- | -- | -- | 0.588 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.65 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 3 | 214.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 4 | 214.23 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 12 | 215.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 39 | 219.35 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 43 | 219.57 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 51 | 220.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 52 | 220.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 70 | 221.14 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 82 | 221.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 85 | 221.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 88 | 221.76 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 91 | 221.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 94 | 221.83 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 99 | 221.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 104 | 222.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 107 | 222.13 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 108 | 222.13 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 127 | 222.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 139 | 222.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 200 | 222.64 | temperature | 30 | 1440 | > th | dose dependent | sin | 23 | NA |
| 206 | 222.70 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 312 | 222.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 316 | 223.00 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 318 | 223.00 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 439 | 223.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 502 | 223.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 653 | 224.10 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 657 | 224.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 737 | 224.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 741 | 224.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 750 | 224.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 761 | 224.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 763 | 224.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 766 | 224.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 789 | 224.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 812 | 224.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 816 | 224.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 900 | 224.79 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 908 | 224.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 912 | 224.86 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 913 | 224.86 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 921 | 224.88 | wind | 9 | 43200 | < th | dose independent | sin | 11 | NA |
| 939 | 225.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 947 | 225.04 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 953 | 225.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 956 | 225.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 963 | 225.12 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 977 | 225.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 979 | 225.13 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 986 | 225.16 | temperature | 30 | 1440 | < th | dose independent | sin | 21 | NA |
| 992 | 225.19 | temperature | 30 | 1440 | > th | dose independent | sin | 20 | NA |